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CaUC04G070490 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G070490
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionSWIM-type domain-containing protein
Genome locationCiama_Chr04:17236312..17239706
RNA-Seq ExpressionCaUC04G070490
SyntenyCaUC04G070490
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011654398.1 uncharacterized protein LOC105435382 [Cucumis sativus]2.8e-1371.43Show/hide
Query:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        +S S  V PINN E  V+ GD Q IVKL+LGSCSCRVWDF+EIPC+HALVVLW LN
Subjt:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]2.9e-1064.29Show/hide
Query:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        QS S  VDPINN E KVIDGD+  +V L   SCSCRVWD  EIPCAHA  V+  LN
Subjt:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

XP_038896390.1 uncharacterized protein LOC120084653 [Benincasa hispida]1.3e-1053.03Show/hide
Query:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLNNKKGSKHLVD
        QS S  V PI+N E  V+DGD Q +VKL+ GSCSCRVWDF +IPC+HAL +L    N+   + ++D
Subjt:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLNNKKGSKHLVD

XP_038902433.1 uncharacterized protein LOC120089079 [Benincasa hispida]2.9e-1068.52Show/hide
Query:  ESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        ES  VDPI+N E K++DG  Q IVKL+LGS S RVWDF EIPCAHAL VL  LN
Subjt:  ESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

XP_038904248.1 uncharacterized protein LOC120090597 [Benincasa hispida]7.5e-1164.29Show/hide
Query:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        QS S  V PI+N +  V+DGD Q +VKL+LGSCSCRVWDF EI C+HALV+L  LN
Subjt:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

TrEMBL top hitse value%identityAlignment
A0A5A7T3G5 Protein FAR1-RELATED SEQUENCE 4-like2.2e-0862.75Show/hide
Query:  SESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL
        S S +V+ IN+ E +VIDG  Q IV+LD  SC+CRVWD +EIPCAHAL VL
Subjt:  SESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL

A0A5A7UZ18 Protein FAR1-RELATED SEQUENCE 4-like2.2e-0862.75Show/hide
Query:  SESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL
        S S +V+ IN+ E +VIDG  Q IV+LD  SC+CRVWD +EIPCAHAL VL
Subjt:  SESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL

A0A5A7V9D5 SWIM-type domain-containing protein5.3e-1060.71Show/hide
Query:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        +S  + VDPI+  E +V DG+ Q IVKL++G CSCRVWD  EIPCAHAL VL  LN
Subjt:  QSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

A0A5D3DAW8 Protein FAR1-RELATED SEQUENCE 4-like2.2e-0862.75Show/hide
Query:  SESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL
        S S +V+ IN+ E +VIDG  Q IV+LD  SC+CRVWD +EIPCAHAL VL
Subjt:  SESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL

A0A5D3DJR8 MuDR family transposase2.2e-0862.75Show/hide
Query:  SESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL
        S S +V+ IN+ E +VIDG  Q IV+LD  SC+CRVWD +EIPCAHAL VL
Subjt:  SESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGAAATAGAGTTTTATCTCTGTCTATCACGATAGACGATCTTTCAGTATGCATACTGATAGACGTTGTTAGATGTCAATCAGAGTCTATTAGTGTTGATCCCAT
TAACAACAATGAAATCAAAGTAATTGACGGTGATAGTCAATCCATAGTGAAGCTGGACTTGGGATCTTGCAGTTGTCGAGTATGGGATTTTAATGAAATTCCATGTGCTC
ATGCACTTGTTGTTCTTTGGAAGCTGAATAACAAAAAAGGATCGAAGCATCTTGTTGATCCTCCTGGAGTCATAGCAAGGTTGCTTAACGGTGGTGTCTGTGATCTTGGA
GGTTTTGAGAAGCTTAAGAGAGAGCTCAAGAGAAGTCTAGTGAGCTCAGTGGGACCCATGAAAGCTCAAGAGGAGTCTAGTGAGCTCAGTGAGACTCATGAGGCGAGAGC
TCAAGAGGAGTCTAGTGGACCCATGGGGAGTTTAAAGGACCCATGGGGAGACCTTAATGAGCTAGACCCAATTAAGAAAGCAGGACGACCTGACATAAGGGAGATCGACC
TGAGAAAGGAAGTCGACCTGGCAGGTCGAGCTAAGACAGAAGGTCAAGTTAAAAAAGGAAGTCGACCTGAGAAAGGAGATCGACTTGAGAAAAGAGGTCGACCTAGCAGA
GTCGAGCACATTGATGCCAGGATGTGTAATGGCTTTAACAATGATGACTTTAAGGGTCAGAGGATTGAGCGACTGCCGGCTTTCGGAGGAGCATGCGATCGCCAACCTCC
AAGCTTGCAAAGAAAAAAAGTGATCAGGAAAGGTACACGTTGGAATAAGGGAAGAAGGGAGAAAGGAAAAAGAGGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGAAATAGAGTTTTATCTCTGTCTATCACGATAGACGATCTTTCAGTATGCATACTGATAGACGTTGTTAGATGTCAATCAGAGTCTATTAGTGTTGATCCCAT
TAACAACAATGAAATCAAAGTAATTGACGGTGATAGTCAATCCATAGTGAAGCTGGACTTGGGATCTTGCAGTTGTCGAGTATGGGATTTTAATGAAATTCCATGTGCTC
ATGCACTTGTTGTTCTTTGGAAGCTGAATAACAAAAAAGGATCGAAGCATCTTGTTGATCCTCCTGGAGTCATAGCAAGGTTGCTTAACGGTGGTGTCTGTGATCTTGGA
GGTTTTGAGAAGCTTAAGAGAGAGCTCAAGAGAAGTCTAGTGAGCTCAGTGGGACCCATGAAAGCTCAAGAGGAGTCTAGTGAGCTCAGTGAGACTCATGAGGCGAGAGC
TCAAGAGGAGTCTAGTGGACCCATGGGGAGTTTAAAGGACCCATGGGGAGACCTTAATGAGCTAGACCCAATTAAGAAAGCAGGACGACCTGACATAAGGGAGATCGACC
TGAGAAAGGAAGTCGACCTGGCAGGTCGAGCTAAGACAGAAGGTCAAGTTAAAAAAGGAAGTCGACCTGAGAAAGGAGATCGACTTGAGAAAAGAGGTCGACCTAGCAGA
GTCGAGCACATTGATGCCAGGATGTGTAATGGCTTTAACAATGATGACTTTAAGGGTCAGAGGATTGAGCGACTGCCGGCTTTCGGAGGAGCATGCGATCGCCAACCTCC
AAGCTTGCAAAGAAAAAAAGTGATCAGGAAAGGTACACGTTGGAATAAGGGAAGAAGGGAGAAAGGAAAAAGAGGGGAATAG
Protein sequenceShow/hide protein sequence
MDRNRVLSLSITIDDLSVCILIDVVRCQSESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLNNKKGSKHLVDPPGVIARLLNGGVCDLG
GFEKLKRELKRSLVSSVGPMKAQEESSELSETHEARAQEESSGPMGSLKDPWGDLNELDPIKKAGRPDIREIDLRKEVDLAGRAKTEGQVKKGSRPEKGDRLEKRGRPSR
VEHIDARMCNGFNNDDFKGQRIERLPAFGGACDRQPPSLQRKKVIRKGTRWNKGRREKGKRGE