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CaUC04G070510 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G070510
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCiama_Chr04:17337548..17339146
RNA-Seq ExpressionCaUC04G070510
SyntenyCaUC04G070510
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045094.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-1470.69Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD
        K D+ RPI+ ILDG+NYITWA+QMRSFLIG+KLW+IVTGDITKPIK TP   +T K +
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD

KAA0058217.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa]1.1e-1470.69Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD
        KSD+ RPI+ ILDG+NYITWAHQMRS LIG+KLW+IV GDITKPIK TP   +T K +
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD

KAA0058316.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.4e-1484.78Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIK
        K+DV RPI+ ILDGTNYITWAHQMRSFLIG+KLW+IVTGDITKP+K
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIK

XP_008450155.1 PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo]1.1e-1470.69Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD
        K D+ RPI+ ILDG+NYITWA+QMRSFLIG+KLW+IVTGDITKPIK TP   +T K +
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]1.3e-1574.14Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD
        K +V RPI+ ILDGTNYITWAHQMRSFLIG+KLW+IVTGDITKP+K TP  D T   D
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD

TrEMBL top hitse value%identityAlignment
A0A1S3BPL0 uncharacterized protein LOC1034918285.3e-1570.69Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD
        K D+ RPI+ ILDG+NYITWA+QMRSFLIG+KLW+IVTGDITKPIK TP   +T K +
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-1584.78Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIK
        K+DV RPI+ ILDGTNYITWAHQMRSFLIG+KLW+IVTGDITKP+K
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIK

A0A5A7TPN5 Putative mitochondrial protein5.3e-1570.69Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD
        K D+ RPI+ ILDG+NYITWA+QMRSFLIG+KLW+IVTGDITKPIK TP   +T K +
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD

A0A5A7UU01 CACTA en-spm transposon protein5.3e-1570.69Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD
        KSD+ RPI+ ILDG+NYITWAHQMRS LIG+KLW+IV GDITKPIK TP   +T K +
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKD

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-1584.78Show/hide
Query:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIK
        K+DV RPI+ ILDGTNYITWAHQMRSFLIG+KLW+IVTGDITKP+K
Subjt:  KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAGTGATGTTTTACGCCCCATTACCATTATACTTGACGGTACAAACTACATCACGTGGGCTCATCAAATGAGGAGTTTTTTGATTGGTCAAAAACTGTGGCAAATCGT
CACGGGAGACATCACCAAACCTATCAAAAACACACCTAAAAAGGATGACACACCTAAAAAGGATGCGGCGGTGACGGTGTCATATGGCGACCGTGAACTGAGAGACTAA
mRNA sequenceShow/hide mRNA sequence
AAAAGTGATGTTTTACGCCCCATTACCATTATACTTGACGGTACAAACTACATCACGTGGGCTCATCAAATGAGGAGTTTTTTGATTGGTCAAAAACTGTGGCAAATCGT
CACGGGAGACATCACCAAACCTATCAAAAACACACCTAAAAAGGATGACACACCTAAAAAGGATGCGGCGGTGACGGTGTCATATGGCGACCGTGAACTGAGAGACTAA
Protein sequenceShow/hide protein sequence
KSDVLRPITIILDGTNYITWAHQMRSFLIGQKLWQIVTGDITKPIKNTPKKDDTPKKDAAVTVSYGDRELRD