; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC04G070710 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G070710
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPhotosystem I assembly protein Ycf4
Genome locationCiama_Chr04:18038514..18044918
RNA-Seq ExpressionCaUC04G070710
SyntenyCaUC04G070710
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003359 - Photosystem I Ycf4, assembly


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2066256.1 hypothetical protein ES319_A09G147200v1, partial [Gossypium barbadense]1.6e-1957.02Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLK-IKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGH
        P   +G+VSD+MLRGVENK RS DSRIGQP + +  S +D R  GE     L H             L SEAV+C TL+G+SPV ESITSL S+P+SMGH
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLK-IKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGH

Query:  VEYCVNQQGPPCKA
        VE  VNQQGPPCKA
Subjt:  VEYCVNQQGPPCKA

KAG5070513.1 hypothetical protein JHK85_002890 [Glycine max]1.7e-2462.83Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV
        P   +G+VSD+MLRGVENK RS DSR     + KESKSDSR+SGERN SSLN    V+ E          + ECCTL+GESPV ESITSL S+P+SMGHV
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV

Query:  EYCVNQQGPPCKA
        E  VNQQGPPCKA
Subjt:  EYCVNQQGPPCKA

OVA05688.1 hypothetical protein BVC80_4285g1 [Macleaya cordata]1.6e-1955.75Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV
        P   +G+ SD+MLRGVENK RS DSRIGQP ++  +      +G+R    L H              LSEAVEC TL+GESPV ESITSL S+P+SMGHV
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV

Query:  EYCVNQQGPPCKA
        E  VNQQGPPCKA
Subjt:  EYCVNQQGPPCKA

PPD66779.1 hypothetical protein GOBAR_DD36340 [Gossypium barbadense]3.6e-1956.14Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESK-SDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGH
        P   +G+VSD+MLRGVENK RS DSRIGQP ++  +  +D R  GE     L H              LSEAV+C TL+G+SPV ESITSL S+P+SMGH
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESK-SDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGH

Query:  VEYCVNQQGPPCKA
        VE  VNQQGPPCKA
Subjt:  VEYCVNQQGPPCKA

TKY56360.1 hypothetical protein E2542_SST20803 [Spatholobus suberectus]2.5e-2055.75Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV
        P   +G+VSD+MLRGVENK RS DSR          ++D+ ++G +  +             TSVVLL EAVECCTL+GESPV ESITSL S+P+SMGHV
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV

Query:  EYCVNQQGPPCKA
        E  VNQQGPPCKA
Subjt:  EYCVNQQGPPCKA

TrEMBL top hitse value%identityAlignment
A0A200Q5G5 Uncharacterized protein ycf687.9e-2055.75Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV
        P   +G+ SD+MLRGVENK RS DSRIGQP ++  +      +G+R    L H              LSEAVEC TL+GESPV ESITSL S+P+SMGHV
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV

Query:  EYCVNQQGPPCKA
        E  VNQQGPPCKA
Subjt:  EYCVNQQGPPCKA

A0A2N9IA97 Uncharacterized protein ycf685.3e-2463.96Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWES-NTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGH
        P   +G+VSD+MLRGVENK RS DSRI +    KESKSDSR+SGERN SSLN    V+ E         S  VECCTL+GESPV ESITSL S+P+SMGH
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWES-NTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGH

Query:  VEYCVNQQGPP
        VE  VNQQGPP
Subjt:  VEYCVNQQGPP

A0A5J5UEP5 Uncharacterized protein (Fragment)7.9e-2057.02Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLK-IKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGH
        P   +G+VSD+MLRGVENK RS DSRIGQP + +  S +D R  GE     L H             L SEAV+C TL+G+SPV ESITSL S+P+SMGH
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLK-IKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGH

Query:  VEYCVNQQGPPCKA
        VE  VNQQGPPCKA
Subjt:  VEYCVNQQGPPCKA

A0A6N2L5J2 Uncharacterized protein ycf68 (Fragment)1.0e-3566.42Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKI---------------------KESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNG
        PR+EEG+VSD+MLRGVENK RS DSRIGQP K+                     K  +SDSR+SGERN SSLN  +  LWESNTSVVLL EAVECCTL+G
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKI---------------------KESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNG

Query:  ESPVVESITSLCSNPNSMGHVEYCVNQQGPPCKA
        ESPV ESITSLCS+P+SMGHVE  VNQQGPPCKA
Subjt:  ESPVVESITSLCSNPNSMGHVEYCVNQQGPPCKA

A0A6N2L9E4 Uncharacterized protein ycf683.4e-3172.57Show/hide
Query:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV
        PR+EEG    +   GVENK RS DSRI    + KESKSDSR+SGERN SSLN  +  LWESNTSVVLL EAVECCTL+GESPV ESITSLCS+P+SMGHV
Subjt:  PRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHV

Query:  EYCVNQQGPPCKA
        E  VNQQGPPCKA
Subjt:  EYCVNQQGPPCKA

SwissProt top hitse value%identityAlignment
A1EA19 Photosystem I assembly protein Ycf41.0e-0881.82Show/hide
Query:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF
        G+VMSFYGIA LFISSYLWCTILWNVGS  + F
Subjt:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF

P62719 Photosystem I assembly protein Ycf41.0e-0881.82Show/hide
Query:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF
        G+VMSFYGIA LFISSYLWCTILWNVGS  + F
Subjt:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF

Q2QD78 Photosystem I assembly protein Ycf47.9e-0984.85Show/hide
Query:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF
        GIVMSFYGIA LFISSYLWCTILWNVGS  + F
Subjt:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF

Q6L602 Photosystem I assembly protein Ycf41.0e-0881.82Show/hide
Query:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF
        G+VMSFYGIA LFISSYLWCTILWNVGS  + F
Subjt:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF

Q70XZ2 Photosystem I assembly protein Ycf47.9e-0984.85Show/hide
Query:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF
        GIVMSFYGIA LFISSYLWCTILWNVGS  + F
Subjt:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF

Arabidopsis top hitse value%identityAlignment
ATCG00520.1 unfolded protein binding4.7e-0981.82Show/hide
Query:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF
        GIVMSFYGIA LFIS YLWCTILWNVGS  + F
Subjt:  GIVMSFYGIASLFISSYLWCTILWNVGSELEEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTACCCAGAAACGAGGAAGGCATAGTAAGTGACAAAATGCTTCGAGGAGTTGAAAATAAGTGTAGATCTAGAGATTCCCGAATAGGTCAACCTTTGAAAATAAAAGAAAG
CAAAAGCGATTCCCGTAATAGTGGCGAGCGAAATGCGAGCAGCCTAAACCACATGAAAATGGTGTTGTGGGAGAGCAATACAAGCGTCGTGTTGCTAAGCGAAGCGGTGG
AATGTTGCACCCTAAATGGCGAGAGTCCAGTAGTTGAAAGCATCACTAGCTTATGCTCTAACCCGAATAGCATGGGGCATGTGGAATATTGTGTGAATCAACAAGGACCA
CCTTGCAAGGCTATAGGGATCGTAATGTCTTTCTATGGGATTGCTAGTCTCTTTATTAGCTCCTATTTGTGGTGCACTATTTTGTGGAATGTAGGTAGCGAATTAGAGGA
ATTCTTTGTCTTGGACGAAATGCAAAAGGAATACCCAGAAACATATCTACAAAAGCTTTGTATCAGAATCTACAAAGAGCTTCGTGTTTATAATTCATAA
mRNA sequenceShow/hide mRNA sequence
GTACCCAGAAACGAGGAAGGCATAGTAAGTGACAAAATGCTTCGAGGAGTTGAAAATAAGTGTAGATCTAGAGATTCCCGAATAGGTCAACCTTTGAAAATAAAAGAAAG
CAAAAGCGATTCCCGTAATAGTGGCGAGCGAAATGCGAGCAGCCTAAACCACATGAAAATGGTGTTGTGGGAGAGCAATACAAGCGTCGTGTTGCTAAGCGAAGCGGTGG
AATGTTGCACCCTAAATGGCGAGAGTCCAGTAGTTGAAAGCATCACTAGCTTATGCTCTAACCCGAATAGCATGGGGCATGTGGAATATTGTGTGAATCAACAAGGACCA
CCTTGCAAGGCTATAGGGATCGTAATGTCTTTCTATGGGATTGCTAGTCTCTTTATTAGCTCCTATTTGTGGTGCACTATTTTGTGGAATGTAGGTAGCGAATTAGAGGA
ATTCTTTGTCTTGGACGAAATGCAAAAGGAATACCCAGAAACATATCTACAAAAGCTTTGTATCAGAATCTACAAAGAGCTTCGTGTTTATAATTCATAA
Protein sequenceShow/hide protein sequence
VPRNEEGIVSDKMLRGVENKCRSRDSRIGQPLKIKESKSDSRNSGERNASSLNHMKMVLWESNTSVVLLSEAVECCTLNGESPVVESITSLCSNPNSMGHVEYCVNQQGP
PCKAIGIVMSFYGIASLFISSYLWCTILWNVGSELEEFFVLDEMQKEYPETYLQKLCIRIYKELRVYNS