; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC04G073310 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G073310
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionsignal recognition particle 19 kDa protein
Genome locationCiama_Chr04:22507126..22513177
RNA-Seq ExpressionCaUC04G073310
SyntenyCaUC04G073310
Gene Ontology termsGO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN54616.2 hypothetical protein Csa_018066 [Cucumis sativus]8.8e-1197.62Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGK GRKKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
XP_004147628.1 signal recognition particle 19 kDa protein [Cucumis sativus]6.3e-0995.24Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLMLRIAELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
XP_004147903.1 signal recognition particle 19 kDa protein [Cucumis sativus]8.8e-1197.62Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGK GRKKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
XP_008438988.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]8.3e-0992.86Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLMLR+AELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]6.3e-0995.24Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLMLRIAELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
TrEMBL top hitse value%identityAlignment
A0A0A0L5F9 Uncharacterized protein3.1e-0995.24Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLMLRIAELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
A0A1S3AYC2 signal recognition particle 19 kDa protein4.0e-0992.86Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLMLR+AELVPRHPGRTKKQEPA SSSTAGPSKGK GRKKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
A0A2N9EIY8 Uncharacterized protein4.4e-0876.6Show/hide
Query:  YIAGKQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSK-GKSGRKKK
        ++ GKQLML +AELVPRHPGR KKQEPAS++STAGPSK  KSGRKK+
Subjt:  YIAGKQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSK-GKSGRKKK
A0A6J1GUF8 signal recognition particle 19 kDa protein1.5e-0892.86Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLMLRIAELVPRHPGR KKQEPA SSSTAGPSKGK GRKKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
A0A6J1IY39 signal recognition particle 19 kDa protein1.5e-0892.86Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLMLRIAELVPRHPGR KKQEPA SSSTAGPSKGK GRKKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
SwissProt top hitse value%identityAlignment
P49964 Signal recognition particle 19 kDa protein4.3e-0878.57Show/hide
Query:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
        KQLM++IAELVP+H GRTKKQEPA +SSTAG SKGK G+KKK
Subjt:  KQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSGRKKK
Arabidopsis top hitse value%identityAlignment
AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative8.5e-0451.92Show/hide
Query:  KQLMLRIAELVPRHPGR--------TKKQEPASSSSTAGPS--KGKSGRKKK
        K LM +IAELVPRHP R         KKQEP +++ST+G S   GK G+KK+
Subjt:  KQLMLRIAELVPRHPGR--------TKKQEPASSSSTAGPS--KGKSGRKKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACAAGACAACGATCGGTGGGGAATGGTAAGGAAAATGGATGCTCGAATTGCAGCCGTTGAAGAACAACTTACCTTGTTGCAGGCTGGAATGGAGGCTCGTGTGGA
TCAGAGGTTCCTCGAATTACAACAGGTCACAGAAAATGTCTTGACAACCAGTGGAAATACCCTAGATTACAATTTTACATATGAGGTATCTGGCTATATTGCAGGAAAAC
AACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGA
AGAAAGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAACAAGACAACGATCGGTGGGGAATGGTAAGGAAAATGGATGCTCGAATTGCAGCCGTTGAAGAACAACTTACCTTGTTGCAGGCTGGAATGGAGGCTCGTGTGGA
TCAGAGGTTCCTCGAATTACAACAGGTCACAGAAAATGTCTTGACAACCAGTGGAAATACCCTAGATTACAATTTTACATATGAGGTATCTGGCTATATTGCAGGAAAAC
AACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAACCTGCATCATCATCATCAACCGCAGGACCTTCAAAAGGCAAGAGTGGA
AGAAAGAAGAAATAG
Protein sequenceShow/hide protein sequence
MQQDNDRWGMVRKMDARIAAVEEQLTLLQAGMEARVDQRFLELQQVTENVLTTSGNTLDYNFTYEVSGYIAGKQLMLRIAELVPRHPGRTKKQEPASSSSTAGPSKGKSG
RKKK