; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC04G073530 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G073530
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCiama_Chr04:22699675..22700436
RNA-Seq ExpressionCaUC04G073530
SyntenyCaUC04G073530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2013589.1 hypothetical protein ES319_D09G166000v1 [Gossypium barbadense]5.3e-0947.44Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + V + +++RPFSI P  +          SKIFA +G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

KAE8649554.1 hypothetical protein Csa_018195 [Cucumis sativus]4.3e-1972Show/hide
Query:  MVFWNWKCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTE
        M F N+KCLFL FLL  V FRNGVI VE SSRPFSI PIL+ +KGFKGYY+S+IFA +GIECKCCD IGGK   E
Subjt:  MVFWNWKCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTE

KAG6595355.1 hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1552.69Show/hide
Query:  EMVFWNWKCLFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDG-IGGKCSTEF-TTSCSNLHCSPWKQY
        EM    WK   +  +LV   F NGV+VE SSR   + P+   K GF+  Y+S + A +GIECKCCD  IGGKCST F   SCSNL CSPWK Y
Subjt:  EMVFWNWKCLFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDG-IGGKCSTEF-TTSCSNLHCSPWKQY

PRQ43088.1 hypothetical protein RchiOBHm_Chr3g0464651 [Rosa chinensis]4.1e-0946.34Show/hide
Query:  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY
        L L  LLVA +    + VEA  RP S+F         +GY  SK+F  +GI C+CCDG+GG+C + +T SCS+L C PWKQ+
Subjt:  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY

TYJ19036.1 hypothetical protein E1A91_A09G163400v1 [Gossypium mustelinum]7.0e-0946.15Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + + + +++RPFSI P  +          SKIFA +G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

TrEMBL top hitse value%identityAlignment
A0A0A0KXD1 Uncharacterized protein2.0e-3380.22Show/hide
Query:  MVFWNWKCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY
        M F N+KCLFL FLL  V FRNGVI VE SSRPFSI PIL+ +KGFKGYY+S+IFA +GIECKCCD IGGKCSTEFTTSCSNLHCSPWKQY
Subjt:  MVFWNWKCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY

A0A0D2NTZ8 Uncharacterized protein2.6e-0947.44Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + V + +++RPFSI P  +          SKIFA +G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

A0A2P6R9H6 Uncharacterized protein2.0e-0946.34Show/hide
Query:  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY
        L L  LLVA +    + VEA  RP S+F         +GY  SK+F  +GI C+CCDG+GG+C + +T SCS+L C PWKQ+
Subjt:  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY

A0A5D2JJ88 Uncharacterized protein2.6e-0947.44Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + V + +++RPFSI P  +          SKIFA +G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

A0A5J5Q4W0 Uncharacterized protein2.6e-0947.44Show/hide
Query:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK
        L FLLV     + V + +++RPFSI P  +          SKIFA +G+ CKCCDG GG+CST +T  CS L C PWK
Subjt:  LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTGTTTTTTGAGATGGTTTTTTGGAATTGGAAGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGCAGCAG
ACCCTTCTCAATCTTCCCAATCCTGGAACCTAAAAAAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAATAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTG
GAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCTGTTTTTTGAGATGGTTTTTTGGAATTGGAAGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGCAGCAG
ACCCTTCTCAATCTTCCCAATCCTGGAACCTAAAAAAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAATAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTG
GAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGAATCCAATCTCTATTTCCTTTCTTGCAATTCTCTCTCTCT
CTCTCTCTTTTTTTTTTCCTTGTAAAATACAAATGAGATAATATGGAATACGAGTACTTGGTGATGACAATGATATTATATATAAAACAATACTTATAGTGT
Protein sequenceShow/hide protein sequence
MMLFFEMVFWNWKCLFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFAIVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY