CuGenDBv2

Gene ID	CaUC04G074000
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA-directed RNA polymerase subunit alpha
Genome location	Ciama_Chr04:23148650..23149038
RNA-Seq Expression	CaUC04G074000
Synteny	CaUC04G074000
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011260 - RNA polymerase, alpha subunit, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

QZL38625.1 RNA polymerase alpha subunit [Citrullus naudinianus]

4.8e-36

94.38

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMKIKHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

YP_009326021.1 RNA polymerase alpha subunit [Citrullus lanatus]

4.8e-36

94.38

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMKIKHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

YP_009752107.1 RNA polymerase subunit alpha [Dendrosicyos socotranus]

1.1e-35

93.26

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMK+KHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

YP_009752867.1 RNA polymerase subunit alpha [Baijiania yunnanensis]

1.1e-35

93.26

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMK+KHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

YP_010131126.1 RNA polymerase alpha subunit [Benincasa hispida]

4.8e-36

94.38

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMKIKHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LDB9 DNA-directed RNA polymerase subunit alpha

2.3e-36

94.38

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMKIKHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

A0A1P8LEA2 DNA-directed RNA polymerase subunit alpha

2.3e-36

94.38

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMKIKHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

A0A249RX13 DNA-directed RNA polymerase subunit alpha

2.3e-36

94.38

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMKIKHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

A0A343A8E2 DNA-directed RNA polymerase subunit alpha

2.3e-36

94.38

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMKIKHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

A0A7T3QNL8 RNA polymerase alpha subunit

2.3e-36

94.38

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKRSNI HTLFDLLNNS DELMKIKHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

SwissProt top hits

e value

%identity

Alignment

A4GYU3 DNA-directed RNA polymerase subunit alpha

8.5e-28

73.56

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Query:  KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNF
        K+TLPLF FH++LAKLRK +KEIALK IFIDQ EL P+I NCLKRSNI HTL+DLL NS ++LMKI+HFRIEDVKHI  IL++EK+F
Subjt:  KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNF

Q14FC5 DNA-directed RNA polymerase subunit alpha

8.5e-28

73.56

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Query:  KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNF
        K+TLPLF FH++LAKLRK +KEIALK IFIDQ EL P+I NCLKRSNI HTL+DLL NS ++LMKI+HFRIEDVKHI  IL++EK+F
Subjt:  KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNF

Q2L938 DNA-directed RNA polymerase subunit alpha

5.0e-28

80.25

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Query:  VTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILE
        VTLP F FH++L KL KKKKEIALKYIFIDQSELPPRI NCLK+SNI HTL DLLNNS ++LMKI+HFRIEDVK IL ILE
Subjt:  VTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILE

Q2PMQ3 DNA-directed RNA polymerase subunit alpha

3.5e-29

76.67

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Query:  KVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        KVTLPLFTFH+ LA  KLRKKKKEIALK IFIDQ ELPPRI NCLKRSNI HTL +LLNNS ++L+KI+HFR+EDVK+IL+ LE+EK+FA
Subjt:  KVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

Q4VZK3 DNA-directed RNA polymerase subunit alpha

3.1e-38

93.26

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Query:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA
        +KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRI NCLKR NI HTLFDLLNNS DELMKIKHFRIEDVKHIL+ILEMEKNFA
Subjt:  EKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

Arabidopsis top hits

e value

%identity

Alignment

ATCG00740.1 RNA polymerase subunit alpha

6.9e-25

69.05

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Query:  KVTLPLFTFHEKLAKLRKKK--KEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILE
        +VTLP F FH +L  LRKKK  KE+A +YIFIDQ ELPPRI NCLK+SNI HTL DLLNNS ++L+KI+HF +EDVK IL+ILE
Subjt:  KVTLPLFTFHEKLAKLRKKK--KEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILE

Sequences

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CDS sequence

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ATGGAAAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCTAAACTAAGGAAAAAGAAAAAAGAAATAGCATTAAAATATATTTTTATTGACCAATCAGAATT
GCCTCCTAGGATCAATAATTGCCTCAAAAGGTCAAATATACAACATACATTATTTGACCTTTTGAATAATAGTCTAGACGAACTTATGAAAATAAAACATTTTCGCATAG
AAGACGTAAAACATATATTAGAAATTCTCGAAATGGAAAAGAATTTTGCATAA

mRNA sequence

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Protein sequence

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MEKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRINNCLKRSNIQHTLFDLLNNSLDELMKIKHFRIEDVKHILEILEMEKNFA

CaUC04G074000 (gene) of Watermelon (USVL246-FR2) v1 genome