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CaUC04G074090 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G074090
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA-binding protein S1FA
Genome locationCiama_Chr04:23218667..23220440
RNA-Seq ExpressionCaUC04G074090
SyntenyCaUC04G074090
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143239.1 DNA-binding protein S1FA [Cucumis sativus]3.7e-2794.37Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIRD +ARGFNPGLIVLLVVGGLL AFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_021647305.1 DNA-binding protein S1FA-like isoform X1 [Hevea brasiliensis]1.8e-2679.27Show/hide
Query:  LQAVNIGLGSQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        L A+ + LG + NV++D +ARGFNPGLIVLLVVGGL+LAFL+GNYALYMYAQKTLPPKKKKP+SKKKMK+ERLKQG+SAPGE
Subjt:  LQAVNIGLGSQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_022143745.1 DNA-binding protein S1FA-like [Momordica charantia]1.4e-2694.37Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G VIRDADA GFNPGL+VLLVVGGLLLAFLVGNYALY+YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_022962636.1 DNA-binding protein S1FA-like [Cucurbita moschata]6.3e-2794.37Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIR+ADARGFNPGLIVLLVVGGLLLAFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

XP_038881351.1 DNA-binding protein S1FA-like [Benincasa hispida]3.3e-2898.59Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIRDADARGFNPGLIVLLVVGGLLLAFL GNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

TrEMBL top hitse value%identityAlignment
A0A0A0KEM3 DNA-binding protein S1FA1.8e-2794.37Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIRD +ARGFNPGLIVLLVVGGLL AFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A1S3BLN5 DNA-binding protein S1FA-like8.8e-2794.29Show/hide
Query:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        NVIRD +ARGFNPGLIVLLVVGGLL AFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A5A7TZ88 DNA-binding protein S1FA-like8.8e-2794.29Show/hide
Query:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        NVIRD +ARGFNPGLIVLLVVGGLL AFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQG+SAPGE
Subjt:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A6J1CPM9 DNA-binding protein S1FA-like6.7e-2794.37Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        G VIRDADA GFNPGL+VLLVVGGLLLAFLVGNYALY+YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

A0A6J1HDT2 DNA-binding protein S1FA-like3.0e-2794.37Show/hide
Query:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GNVIR+ADARGFNPGLIVLLVVGGLLLAFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQGISAPGE
Subjt:  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

SwissProt top hitse value%identityAlignment
P42551 DNA-binding protein S1FA11.5e-2075.38Show/hide
Query:  ADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        A+A+G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

P42552 DNA-binding protein S1FA1.7e-2275Show/hide
Query:  IRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        + + +A+G NPGLIVLLV+GGLLL FLVGN+ LY YAQK LPPKKKKP+SKKKMKRERLKQG++ PGE
Subjt:  IRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

P42553 DNA-binding protein S1FA14.1e-2174.29Show/hide
Query:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        N+I +   +G NPG IVLLVV  LL+ F VGNYALYMYAQKTLPP+KKKPVSKKK+KRE+LKQG+SAPGE
Subjt:  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Q42337 DNA-binding protein S1FA25.3e-2166.22Show/hide
Query:  GSQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GS G  +   +A+G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQG+  PGE
Subjt:  GSQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Q7XLX6 DNA-binding protein S1FA21.4e-2171.23Show/hide
Query:  SQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        S  NV+ +   +G NPG+IVL+VV   LL F VGNYALY+YAQKTLPP+KKKPVSKKKMKRE+LKQG+SAPGE
Subjt:  SQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein3.8e-2266.22Show/hide
Query:  GSQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        GS G  +   +A+G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KKKP+SKKK+KRE+LKQG+  PGE
Subjt:  GSQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G09735.1 S1FA-like DNA-binding protein1.9e-2173.44Show/hide
Query:  DARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        +++G NPGLIVLLV+GGLLL FLVGN+ LY YAQK LPP+KKKPVSKKKMK+E++KQG+  PGE
Subjt:  DARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G53370.1 S1FA-like DNA-binding protein1.1e-2175.38Show/hide
Query:  ADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        A+A+G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

AT3G53370.2 S1FA-like DNA-binding protein4.5e-0772.73Show/hide
Query:  YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE
        +A K LPP+KKKPVSKKK+KRE+LKQG+  PGE
Subjt:  YAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTTCTTCCTTGTTCACCTCCTAATCTGAGATCTCTCTTAATGCACATTCTCCTCGAGTGGTTCATGTTACAAGCAGTTAATATTGGCCTTGGTTCACAG
GGGAACGTGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGCTGCTATTGGCTTTTCTTGTTGGGAATTATGCT
CTCTACATGTATGCGCAGAAGACCCTCCCACCAAAAAAGAAGAAACCAGTTTCTAAGAAGAAAATGAAGAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTGGA
GAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTTCTTCCTTGTTCACCTCCTAATCTGAGATCTCTCTTAATGCACATTCTCCTCGAGTGGTTCATGTTACAAGCAGTTAATATTGGCCTTGGTTCACAG
GGGAACGTGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTGCTTGTAGTTGGTGGGCTGCTATTGGCTTTTCTTGTTGGGAATTATGCT
CTCTACATGTATGCGCAGAAGACCCTCCCACCAAAAAAGAAGAAACCAGTTTCTAAGAAGAAAATGAAGAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTGGA
GAGTAG
Protein sequenceShow/hide protein sequence
MFFLPCSPPNLRSLLMHILLEWFMLQAVNIGLGSQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPG
E