; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC04G076330 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G076330
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionCOPII coat assembly protein SEC16, putative
Genome locationCiama_Chr04:25575593..25577123
RNA-Seq ExpressionCaUC04G076330
SyntenyCaUC04G076330
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07441.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa]9.9e-6184.28Show/hide
Query:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK
        MAKSAAQ+TYPPPSPS   LRR + +PSSPMPP N   SPP PPSPINL LLSFKSSSQSYTSLKDILPSASA AAVNSPTAASPANS YEISIRNRLVK
Subjt:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK

Query:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC
        QAAWAYLQPMSASSYSAGP+FFHR  LR STGNPIY C GFI  SIIPAIIR FRFCIC
Subjt:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC

XP_008462609.1 PREDICTED: uncharacterized protein LOC103500927 [Cucumis melo]9.9e-6184.28Show/hide
Query:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK
        MAKSAAQ+TYPPPSPS   LRR + +PSSPMPP N   SPP PPSPINL LLSFKSSSQSYTSLKDILPSASA AAVNSPTAASPANS YEISIRNRLVK
Subjt:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK

Query:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC
        QAAWAYLQPMSASSYSAGP+FFHR  LR STGNPIY C GFI  SIIPAIIR FRFCIC
Subjt:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC

XP_011657724.1 early nodulin-20 [Cucumis sativus]6.8e-6283.85Show/hide
Query:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASAS-AAVNSPTAASPANSGYEISIRNRLV
        MAKS+AQ+TYPPPSPS   LRR + +PSSPMPP N   SPP PPSPINL LLSFKSSSQSYTSLKDILPSASAS AAVNSPTAASPANS YEISIRNRLV
Subjt:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASAS-AAVNSPTAASPANSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCICF
        KQAAWAYLQPMSASSYSAGP+FFHR  LR STGNPIY C GFIR SI+PAIIR FRFCICF
Subjt:  KQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCICF

XP_022979075.1 uncharacterized protein LOC111478820 [Cucurbita maxima]3.2e-5983.23Show/hide
Query:  MAKSAAQITYPPPSPSPS--NLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRL
        MAKSAAQ TYPPPSPSPS  NL RRSL+PSS MPPQNG  SP  PPSPI+LRLLS KSSSQSYTSLKDILP  S++ AVNSPTAASPANSGYEI IRNRL
Subjt:  MAKSAAQITYPPPSPSPS--NLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRL

Query:  VKQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC
        VKQAAWAYLQPMSASSYSAGP+ FHR WLR STGNPI  CLGFIRG IIP+IIRVFR CIC
Subjt:  VKQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC

XP_038883302.1 uncharacterized protein LOC120074291 [Benincasa hispida]1.9e-6788.27Show/hide
Query:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGI---ASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNR
        MAKSAAQITYPPPSPS SNLR R+ +PSSPMPP NG     SPP PPSPINLRLLSFKSSSQSYTSLKDILP  SASAAVNSPTAASPANSGYEISIRNR
Subjt:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGI---ASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNR

Query:  LVKQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC
        LVKQAAWAYLQPMSASSYSAGP+FFHR WLR ST NPIYGCLGFIRG+IIPAIIRVFRFCIC
Subjt:  LVKQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC

TrEMBL top hitse value%identityAlignment
A0A0A0KHJ9 Uncharacterized protein3.3e-6283.85Show/hide
Query:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASAS-AAVNSPTAASPANSGYEISIRNRLV
        MAKS+AQ+TYPPPSPS   LRR + +PSSPMPP N   SPP PPSPINL LLSFKSSSQSYTSLKDILPSASAS AAVNSPTAASPANS YEISIRNRLV
Subjt:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASAS-AAVNSPTAASPANSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCICF
        KQAAWAYLQPMSASSYSAGP+FFHR  LR STGNPIY C GFIR SI+PAIIR FRFCICF
Subjt:  KQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCICF

A0A1S3CHC6 uncharacterized protein LOC1035009274.8e-6184.28Show/hide
Query:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK
        MAKSAAQ+TYPPPSPS   LRR + +PSSPMPP N   SPP PPSPINL LLSFKSSSQSYTSLKDILPSASA AAVNSPTAASPANS YEISIRNRLVK
Subjt:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK

Query:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC
        QAAWAYLQPMSASSYSAGP+FFHR  LR STGNPIY C GFI  SIIPAIIR FRFCIC
Subjt:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC

A0A5A7SL81 Putative COPII coat assembly protein SEC164.8e-6184.28Show/hide
Query:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK
        MAKSAAQ+TYPPPSPS   LRR + +PSSPMPP N   SPP PPSPINL LLSFKSSSQSYTSLKDILPSASA AAVNSPTAASPANS YEISIRNRLVK
Subjt:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK

Query:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC
        QAAWAYLQPMSASSYSAGP+FFHR  LR STGNPIY C GFI  SIIPAIIR FRFCIC
Subjt:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC

A0A5D3C6C7 Putative COPII coat assembly protein SEC164.8e-6184.28Show/hide
Query:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK
        MAKSAAQ+TYPPPSPS   LRR + +PSSPMPP N   SPP PPSPINL LLSFKSSSQSYTSLKDILPSASA AAVNSPTAASPANS YEISIRNRLVK
Subjt:  MAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRLVK

Query:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC
        QAAWAYLQPMSASSYSAGP+FFHR  LR STGNPIY C GFI  SIIPAIIR FRFCIC
Subjt:  QAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC

A0A6J1IS66 uncharacterized protein LOC1114788201.5e-5983.23Show/hide
Query:  MAKSAAQITYPPPSPSPS--NLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRL
        MAKSAAQ TYPPPSPSPS  NL RRSL+PSS MPPQNG  SP  PPSPI+LRLLS KSSSQSYTSLKDILP  S++ AVNSPTAASPANSGYEI IRNRL
Subjt:  MAKSAAQITYPPPSPSPS--NLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASASAAVNSPTAASPANSGYEISIRNRL

Query:  VKQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC
        VKQAAWAYLQPMSASSYSAGP+ FHR WLR STGNPI  CLGFIRG IIP+IIRVFR CIC
Subjt:  VKQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCIC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52520.1 unknown protein3.6e-0843.36Show/hide
Query:  LRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQS----YTSLKDILPSASASAAVNSPT---AASPANSGYEISIRNRLVKQAAWAYLQPMSA
        +   +L+  S +  +NG  S       ++L L+S   SS+     YTSLKDILPS+S +  V+SP    A + A SG  I+IRNRLVKQAA +YLQP S 
Subjt:  LRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQS----YTSLKDILPSASASAAVNSPT---AASPANSGYEISIRNRLVKQAAWAYLQPMSA

Query:  SSYSAGPSFFHRL
         + S+ PSF  R+
Subjt:  SSYSAGPSFFHRL

AT5G06280.1 unknown protein1.2e-1143.18Show/hide
Query:  PPSPSPSNLRRRSLVPSSP---MPPQNGIASPPSPPSPINLRLLSFKSSS-QSYTSLKDILPSASASAAVNSPT---AASP--ANSGYEISIRNRLVKQA
        PPS SP+   RR+   S+     PP+       +PPS  +  L+S K SS  +YTSL+DI+ S+  ++++N P+   + SP  + +  +ISIRNRLVKQA
Subjt:  PPSPSPSNLRRRSLVPSSP---MPPQNGIASPPSPPSPINLRLLSFKSSS-QSYTSLKDILPSASASAAVNSPT---AASP--ANSGYEISIRNRLVKQA

Query:  AWAYLQP--MSASSYSAGPSFFHRLWLRLSTG
        A +YLQP  +++S  SAG  FF R+WL LS G
Subjt:  AWAYLQP--MSASSYSAGPSFFHRLWLRLSTG

AT5G06280.3 unknown protein1.2e-1143.18Show/hide
Query:  PPSPSPSNLRRRSLVPSSP---MPPQNGIASPPSPPSPINLRLLSFKSSS-QSYTSLKDILPSASASAAVNSPT---AASP--ANSGYEISIRNRLVKQA
        PPS SP+   RR+   S+     PP+       +PPS  +  L+S K SS  +YTSL+DI+ S+  ++++N P+   + SP  + +  +ISIRNRLVKQA
Subjt:  PPSPSPSNLRRRSLVPSSP---MPPQNGIASPPSPPSPINLRLLSFKSSS-QSYTSLKDILPSASASAAVNSPT---AASP--ANSGYEISIRNRLVKQA

Query:  AWAYLQP--MSASSYSAGPSFFHRLWLRLSTG
        A +YLQP  +++S  SAG  FF R+WL LS G
Subjt:  AWAYLQP--MSASSYSAGPSFFHRLWLRLSTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAAAACACGTAAGAAAGAGAGAAGGTTTGAGGAAATAATTGCAAAAGATGAAGCCGCCGAGTTTTGTTTTGTCAAAACCCTCTTTCCACATTCCATGGCCAAA
TCCGCCGCCCAAATAACCTATCCACCGCCGTCGCCATCGCCATCAAATCTCCGCCGCAGAAGCTTGGTTCCCTCCTCCCCCATGCCTCCGCAAAACGGCATCGCT
TCCCCTCCTTCACCGCCATCTCCGATTAACTTGAGGCTCCTCTCCTTCAAGTCCTCTTCTCAATCCTACACCTCCCTCAAAGACATCCTTCCCTCCGCCTCCGCC
TCCGCTGCCGTCAACTCTCCCACTGCCGCTTCCCCCGCTAACTCTGGCTACGAAATCTCCATCCGCAATCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAA
CCTATGTCCGCTTCTTCCTATTCCGCCGGCCCCAGTTTCTTCCACCGTCTCTGGCTCCGACTCTCTACTGGAAATCCGATCTACGGTTGTCTCGGATTCATCAGA
GGCAGTATCATTCCGGCCATAATCCGAGTCTTTCGATTCTGCATTTGCTTCTTTCTCACAATTACAAACCTCTATGATTGTGGTTTAATCCGCCTTAAGCGAGCT
CGAACCGCTGGAGGATATGGAGATGCAGAAGTCCGGAGATTGGCCGCCGTCTGCTTCCCCGGTCTCCGAATCGGCGCGGCTGATTCTTTCGACGGACGGCGGCGC
AGCTCTCGGAGAATCGTCCGTCTGATCGGCGACTCGGGCGGAAAACGAGGGCAATTTGATCGGAGGCGGTGGCGATGA
mRNA sequenceShow/hide mRNA sequence
AGGAAAACACGTAAGAAAGAGAGAAGGTTTGAGGAAATAATTGCAAAAGATGAAGCCGCCGAGTTTTGTTTTGTCAAAACCCTCTTTCCACATTCCATGGCCAAA
TCCGCCGCCCAAATAACCTATCCACCGCCGTCGCCATCGCCATCAAATCTCCGCCGCAGAAGCTTGGTTCCCTCCTCCCCCATGCCTCCGCAAAACGGCATCGCT
TCCCCTCCTTCACCGCCATCTCCGATTAACTTGAGGCTCCTCTCCTTCAAGTCCTCTTCTCAATCCTACACCTCCCTCAAAGACATCCTTCCCTCCGCCTCCGCC
TCCGCTGCCGTCAACTCTCCCACTGCCGCTTCCCCCGCTAACTCTGGCTACGAAATCTCCATCCGCAATCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAA
CCTATGTCCGCTTCTTCCTATTCCGCCGGCCCCAGTTTCTTCCACCGTCTCTGGCTCCGACTCTCTACTGGAAATCCGATCTACGGTTGTCTCGGATTCATCAGA
GGCAGTATCATTCCGGCCATAATCCGAGTCTTTCGATTCTGCATTTGCTTCTTTCTCACAATTACAAACCTCTATGATTGTGGTTTAATCCGCCTTAAGCGAGCT
CGAACCGCTGGAGGATATGGAGATGCAGAAGTCCGGAGATTGGCCGCCGTCTGCTTCCCCGGTCTCCGAATCGGCGCGGCTGATTCTTTCGACGGACGGCGGCGC
AGCTCTCGGAGAATCGTCCGTCTGATCGGCGACTCGGGCGGAAAACGAGGGCAATTTGATCGGAGGCGGTGGCGATGACATCGGCGGTTGCTGTTGCTGTTGCTG
TTGCTGATCGGTTCTCTACAATTAAAGTGAGAATAATTAGAGAAAATCCGAAAAATTAGCCATGGGAATGGCTATAAGTGCCATTAATGGCGATGATACTGAAAT
GAGTGAAAGCTTTCAATCACGACGAATTCTAAATTGTTGAGAATTTATTAATTAAAAATAAGAAAGGTTAAATCCTAATTCCCAATTAGGGTAGAATATTTTTAT
GCAATAGTAAAATCAACCATTACTTTTGTGCCACGTGGTTCATTCTCTATGTTTTGGCGCTATTTGAGTAAATATGCTATTAAAATTTGAGTAATACTATATGCA
TTCCACCCTATCTTAATTTCCATGCATCTTCTTCATTCAAAATAAT
Protein sequenceShow/hide protein sequence
RKTRKKERRFEEIIAKDEAAEFCFVKTLFPHSMAKSAAQITYPPPSPSPSNLRRRSLVPSSPMPPQNGIASPPSPPSPINLRLLSFKSSSQSYTSLKDILPSASA
SAAVNSPTAASPANSGYEISIRNRLVKQAAWAYLQPMSASSYSAGPSFFHRLWLRLSTGNPIYGCLGFIRGSIIPAIIRVFRFCICFFLTITNLYDCGLIRLKRA
RTAGGYGDAEVRRLAAVCFPGLRIGAADSFDGRRRSSRRIVRLIGDSGGKRGQFDRRRWR