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CaUC04G076870 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G076870
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRibosomal protein S24/S35, mitochondrial
Genome locationCiama_Chr04:26168686..26170569
RNA-Seq ExpressionCaUC04G076870
SyntenyCaUC04G076870
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584340.1 hypothetical protein SDJN03_20272, partial [Cucurbita argyrosperma subsp. sororia]8.4e-5273.62Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF  CSR +S+SPLL+  RSGPLL  FSV      RCYSSGNDKYNGL ST+ ENKDSLV+DD+S EELK KI++FYEGDV+SLP IFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI
        KRKLSGKH + DDELMKEIR+RMPG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Subjt:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI

KAG7019929.1 hypothetical protein SDJN02_18896, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-5273.62Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF  CSR +S+SPLL+  RSGPLL  FSV      RCYSSGNDKYNGL STT ENKDSLV+DD+S EELK KI++FYEGD++SLP IFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI
        KRKLSGKH + DDELMKEIR+RMPG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Subjt:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI

XP_022924024.1 uncharacterized protein LOC111431572 [Cucurbita moschata]9.9e-5374.85Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF  CSR +S+SPLL+  RSGPLL  FSV      RCYSSGNDKYNGL STT ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI
        KRKLSGKH + DDELMKEIR+R+PG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Subjt:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI

XP_023519890.1 uncharacterized protein LOC111783221 [Cucurbita pepo subsp. pepo]1.2e-5376.07Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTL---RCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF VCSR +S+SPLL+  RSGPLL  FSV      RCYS+GNDKYNGL STT ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTL---RCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI
        KRKLSGKH + DDELMKEIR+RMPG+VEDFKDEE  SDLS ELNETDEE E+    EEEDRR+
Subjt:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI

XP_038894045.1 uncharacterized protein LOC120082798 [Benincasa hispida]4.5e-5377.78Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRK
        MKRA+ GAVFNV SRTLSVSP LR FRSG LLS FS  +LR YSSGNDKYNGL ST  +NKDSL+EDDVSTEELK KI+KFYEGDV+SLPTIFEAILKRK
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRK

Query:  LSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETE---DSSDYEEEDRRI
        LSGKHE+DD E+MKEIR+RMPGQVED   EE  SDLSELNET EE E   DSSD E+EDRR+
Subjt:  LSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETE---DSSDYEEEDRRI

TrEMBL top hitse value%identityAlignment
A0A1S3CEX3 uncharacterized protein LOC1034999295.9e-5174.38Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR
        MKRA+WGAVFNVCSRTLSVSP LR FRS PLLS FSV TLRCYSSGNDKYN L ST  +NKDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR

Query:  KLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEEDRRI
        KLSGKHE+ DDELMKEIR+RMPG++EDFK EE  S+L++        + +SD EEED+RI
Subjt:  KLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEEDRRI

A0A5D3BIA4 Uncharacterized protein5.9e-5174.38Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR
        MKRA+WGAVFNVCSRTLSVSP LR FRS PLLS FSV TLRCYSSGNDKYN L ST  +NKDSLV+DDVSTEELK KI+KFYE GD DSLP IFEAILKR
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYE-GDVDSLPTIFEAILKR

Query:  KLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEEDRRI
        KLSGKHE+ DDELMKEIR+RMPG++EDFK EE  S+L++        + +SD EEED+RI
Subjt:  KLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEEDRRI

A0A6J1C5J6 uncharacterized protein LOC1110085961.0e-4768.07Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTL---RCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        M RA+W AVFNV +R++S+SP L+   SG   +RF+VL     RCYSS NDKYNGL STTN+N  S+V+DDVSTEELK KI+KFYEGDV+SLP+IFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTL---RCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETE------DSSDYEEEDR
        KRKLSGKHE  DDELMKEIR+RMPGQ+EDFKD+EC SDL+   ETDEE +      DSSD EEEDR
Subjt:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETE------DSSDYEEEDR

A0A6J1E804 uncharacterized protein LOC1114315724.8e-5374.85Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF  CSR +S+SPLL+  RSGPLL  FSV      RCYSSGNDKYNGL STT ENKDSLV+DDVS EELK KI++FYEGDV+SLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI
        KRKLSGKH + DDELMKEIR+R+PG+VEDFKDEE  SDLS ELNE+DEE ++ S  EEEDRR+
Subjt:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDRRI

A0A6J1KP40 uncharacterized protein LOC1114952362.9e-5074.53Show/hide
Query:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL
        MKRAIWGAVF  CSR +S+ PLL+  RSGPLL  FSV      RCYSSGNDKYNGL STT ENKDSLV+D VS EELK KI++FYEGDV+SLPTIFEAIL
Subjt:  MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSV---LTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAIL

Query:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDR
        KRKLSGKH + DDELMKEI +RMPG+VEDFKDEE  SDLS +LNETDEE E+ S  EEEDR
Subjt:  KRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLS-ELNETDEETEDSSDYEEEDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G73770.1 FUNCTIONS IN: molecular_function unknown3.3e-0633.02Show/hide
Query:  STTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRK---RMPGQVEDFKDEECGSDLSELNETDEETEDSS
        S ++ ++    E+ +S EELK +I  F  +G+ D++P +FEA++ RKLSGKH++ DDE+M  +RK       +V+D   +       + +++D E++D  
Subjt:  STTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRK---RMPGQVEDFKDEECGSDLSELNETDEETEDSS

Query:  DYEEED
        D +  D
Subjt:  DYEEED

AT1G73770.2 FUNCTIONS IN: molecular_function unknown3.3e-0633.02Show/hide
Query:  STTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRK---RMPGQVEDFKDEECGSDLSELNETDEETEDSS
        S ++ ++    E+ +S EELK +I  F  +G+ D++P +FEA++ RKLSGKH++ DDE+M  +RK       +V+D   +       + +++D E++D  
Subjt:  STTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRK---RMPGQVEDFKDEECGSDLSELNETDEETEDSS

Query:  DYEEED
        D +  D
Subjt:  DYEEED

AT3G18240.1 Ribosomal protein S24/S35, mitochondrial7.0e-1245.79Show/hide
Query:  TTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETED---SSD
        T +  K  LV +DVS +ELKS+I K++ EG+ D+LP + EA+L+R+L  KH E DDEL+++I + +P + +D KDE+  SD  E + TDEE ED   S +
Subjt:  TTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETED---SSD

Query:  YEEEDRR
        Y  E  R
Subjt:  YEEEDRR

AT3G18240.2 Ribosomal protein S24/S35, mitochondrial7.0e-1245.79Show/hide
Query:  TTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETED---SSD
        T +  K  LV +DVS +ELKS+I K++ EG+ D+LP + EA+L+R+L  KH E DDEL+++I + +P + +D KDE+  SD  E + TDEE ED   S +
Subjt:  TTNENKDSLVEDDVSTEELKSKINKFY-EGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETED---SSD

Query:  YEEEDRR
        Y  E  R
Subjt:  YEEEDRR

AT4G21460.1 Ribosomal protein S24/S35, mitochondrial2.4e-1247.66Show/hide
Query:  TTNENKDSLVEDDVSTEELKSKINK-FYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETED---SSD
        T + +K  LV +DVS +ELKS+I+K F EG+ D+LP + EA+L+R+L  KH E DDELM++I + +P + +D KDE+  SD  E + TDEE ED   S +
Subjt:  TTNENKDSLVEDDVSTEELKSKINK-FYEGDVDSLPTIFEAILKRKLSGKHEEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETED---SSD

Query:  YEEEDRR
        Y  E  R
Subjt:  YEEEDRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGAGCTATTTGGGGAGCTGTCTTCAATGTTTGTTCTCGAACACTTTCAGTCTCTCCTCTGCTACGAGCCTTTCGCTCTGGTCCCTTACTGTCTCGATTT
TCCGTTTTGACTTTGCGATGTTACTCATCCGGGAATGACAAGTACAATGGATTGTACTCAACCACGAATGAAAACAAGGATTCTCTCGTTGAAGATGATGTCAGT
ACCGAAGAGCTGAAGAGTAAGATTAATAAATTTTATGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAGGAAGCTATCGGGTAAACAT
GAAGAAGATGATGATGAACTGATGAAAGAAATTCGAAAGCGAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGAATGTGGTTCAGATTTAAGTGAGTTGAAT
GAAACTGATGAAGAAACGGAGGATTCCAGTGATTATGAGGAAGAAGATAGAAGAATATAA
mRNA sequenceShow/hide mRNA sequence
AGTACTGTAAAGAAACGCCATGAAACGAGCTATTTGGGGAGCTGTCTTCAATGTTTGTTCTCGAACACTTTCAGTCTCTCCTCTGCTACGAGCCTTTCGCTCTGG
TCCCTTACTGTCTCGATTTTCCGTTTTGACTTTGCGATGTTACTCATCCGGGAATGACAAGTACAATGGATTGTACTCAACCACGAATGAAAACAAGGATTCTCT
CGTTGAAGATGATGTCAGTACCGAAGAGCTGAAGAGTAAGATTAATAAATTTTATGAGGGTGATGTCGATTCATTACCAACAATTTTTGAAGCAATTTTGAAAAG
GAAGCTATCGGGTAAACATGAAGAAGATGATGATGAACTGATGAAAGAAATTCGAAAGCGAATGCCTGGACAAGTTGAAGATTTTAAAGATGAAGAATGTGGTTC
AGATTTAAGTGAGTTGAATGAAACTGATGAAGAAACGGAGGATTCCAGTGATTATGAGGAAGAAGATAGAAGAATATAAGTTATGTTGATAACGTGAGTTCGATA
GAGTCCATACTTGTTTGATGTTAGATCTTACATTTTTGGGTGAAAAATTTCAACTTCTAACATCTTATTTAGTTTGAAAATCTTTTGATTCATTTTAACTCAGAG
GAACATATCAGATGATCATGGTTTGATCTATGGGCACTTGAACCCCAGCTTGAGGAACTTTGTTGAATGGAATATTGTATGCTATACGTCTTTTAAATGCTAATA
TTTGGATTTATGACATTAGCATGGCCACAGCCAGAGATTTGGAGGTGCAAATTCCTACCTTATATTTGTTGTATGTATTATGGTTTATTTGTAATCACTATTAAA
TATTTGTTCACTAATAGAATTATTATTCTTAAAACCCAAGGTGAATGGACTGGG
Protein sequenceShow/hide protein sequence
MKRAIWGAVFNVCSRTLSVSPLLRAFRSGPLLSRFSVLTLRCYSSGNDKYNGLYSTTNENKDSLVEDDVSTEELKSKINKFYEGDVDSLPTIFEAILKRKLSGKH
EEDDDELMKEIRKRMPGQVEDFKDEECGSDLSELNETDEETEDSSDYEEEDRRI