; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC04G078330 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC04G078330
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptiontranscription factor PRE5-like
Genome locationCiama_Chr04:27677247..27677614
RNA-Seq ExpressionCaUC04G078330
SyntenyCaUC04G078330
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044172 - Transcription factor ILI2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584448.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]6.2e-2783.54Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASS L DDQL+NL+ +LQTLLP LNH    STVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVK LL
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

KAG7020038.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]4.8e-2784.81Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASS L DDQL+NL+ +LQTLLP LNH    STVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVK LL
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

XP_008440200.1 PREDICTED: transcription factor PRE5-like [Cucumis melo]2.1e-2781.48Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL
        MASSKLGD++L+NL+ KL+TLLP LNHK D+S+  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVKDLL+
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL

XP_011649678.1 transcription factor PRE5 [Cucumis sativus]1.3e-2783.75Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSKLGDD+L+NL+ KLQTLLP LNHK  +S+ VS  EILKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVKDLL
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

XP_038895474.1 transcription factor PRE5-like [Benincasa hispida]2.1e-2780.72Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDS---TVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL
        MASSKL DD LQNL+FKLQTLLPHLN K D+    +VS  +ILKETCDYIKKLQREVDDLSERLWKQLDSMGVD EMVKDL+L
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDS---TVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL

TrEMBL top hitse value%identityAlignment
A0A067K4V8 BHLH domain-containing protein4.7e-1255.56Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM---GVDFEMVKDLLL
        +SK+  +++ +LI KLQ LLPH+N +  DS VS ++ILKETC YI KLQREVDDLSE+L + LDSM    VD E +  +LL
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM---GVDFEMVKDLLL

A0A0A0LQ05 DNA binding protein6.1e-2883.75Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL
        MASSKLGDD+L+NL+ KLQTLLP LNHK  +S+ VS  EILKETCDYIKKLQREVDDLSERLWKQLDSMG+DFEMVKDLL
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLL

A0A1S3B0J1 transcription factor PRE5-like1.0e-2781.48Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL
        MASSKLGD++L+NL+ KL+TLLP LNHK D+S+  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVKDLL+
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL

A0A5A7SZP9 Transcription factor PRE5-like1.0e-2781.48Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL
        MASSKLGD++L+NL+ KL+TLLP LNHK D+S+  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEMVKDLL+
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLL

A0A5D3BKI2 Transcription factor PRE5-like6.3e-2581.33Show/hide
Query:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM
        MASSKLGD++L+NL+ KL+TLLP LNHK D+S+  ST EILKETCDYIKKLQ+EVDDLSERLWKQLDSMGVDFEM
Subjt:  MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDST-VSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEM

SwissProt top hitse value%identityAlignment
A2XD15 Transcription factor ILI32.1e-0942.31Show/hide
Query:  KLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSER---LWKQLDSMGVDFEMVKDLL
        ++ D+++  LI KLQ LLP  +     S  S +++LKETC YIK L REVDDLS+R   L   +D+     E+++ LL
Subjt:  KLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSER---LWKQLDSMGVDFEMVKDLL

Q8GW32 Transcription factor PRE68.5e-1143.75Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL
        SS++ DDQ+ +L+ KLQ L+P L  +  D  VS +++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL

Q9CA64 Transcription factor PRE31.1e-1052.54Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERL
        +S++ +DQ+ +LI KLQ LLP L        VS A +L++TC+YI+ L REVDDLSERL
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERL

Q9LJX1 Transcription factor PRE53.8e-1144.93Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S++ DDQ+ +L+ KL+  LP ++ +     VS +++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD

Q9LXG5 Transcription factor PRE21.9e-1043.28Show/hide
Query:  ASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM
        +SS++ DDQ+ +LI KL+  +P +      +TVS +++L+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein6.0e-1243.75Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL
        SS++ DDQ+ +L+ KLQ L+P L  +  D  VS +++L+ETC+YI+ L REVDDLS+RL + L   D    +  +++ LL
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQL---DSMGVDFEMVKDLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 17.9e-1252.54Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERL
        +S++ +DQ+ +LI KLQ LLP L        VS A +L++TC+YI+ L REVDDLSERL
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.7e-1244.93Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD
        +S++ DDQ+ +L+ KL+  LP ++ +     VS +++L+ETC+YI+KL REVD+LS+RL + LDS+  D
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVD

AT3G47710.1 BANQUO 33.3e-1039.24Show/hide
Query:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM-GVDFEMVKDLLL
        +S + D+Q+ +L+ +L  LLP L +      VS + +L+ETC YI+ L +EVDDLSERL + L+S       +++ LL+
Subjt:  SSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM-GVDFEMVKDLLL

AT5G15160.1 BANQUO 21.3e-1143.28Show/hide
Query:  ASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM
        +SS++ DDQ+ +LI KL+  +P +      +TVS +++L+ETC+YI+ L +E DDLS+RL + L+S+
Subjt:  ASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCAAATTAGGCGACGACCAGCTTCAAAATCTCATCTTCAAATTACAAACTTTGCTCCCTCACCTCAACCATAAGTCCGACGATTCTACGGTATCGACAGC
GGAGATATTGAAGGAAACGTGTGATTATATAAAGAAATTGCAGAGGGAGGTGGATGATTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAGA
TGGTTAAGGATCTTCTTCTTACTTAA
mRNA sequenceShow/hide mRNA sequence
AAACACCATTCCTTTCCAATTCTCCTTCTTTCATTCATGGCTTCCTCCAAATTAGGCGACGACCAGCTTCAAAATCTCATCTTCAAATTACAAACTTTGCTCCCTCACCT
CAACCATAAGTCCGACGATTCTACGGTATCGACAGCGGAGATATTGAAGGAAACGTGTGATTATATAAAGAAATTGCAGAGGGAGGTGGATGATTTAAGTGAGAGGCTAT
GGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAGATGGTTAAGGATCTTCTTCTTACTTAAAAAGAAATATT
Protein sequenceShow/hide protein sequence
MASSKLGDDQLQNLIFKLQTLLPHLNHKSDDSTVSTAEILKETCDYIKKLQREVDDLSERLWKQLDSMGVDFEMVKDLLLT