CuGenDBv2

Gene ID	CaUC04G078630
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	Ciama_Chr04:27907614..27907925
RNA-Seq Expression	CaUC04G078630
Synteny	CaUC04G078630
Gene Ontology terms	NA
InterPro domains	IPR002885 - Pentatricopeptide repeat

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004148338.1 pentatricopeptide repeat-containing protein At2g34400 [Cucumis sativus]

3.8e-13

56.41

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN
        M+ GY+KM++ GEAVGLFREMMEAGF+PN++ LV                   SVLGACGELGDL+LGTWV   V+EN
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN

XP_008451433.1 PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Cucumis melo]

3.8e-13

56.41

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN
        M+ GY+KM++ GEAVGLFREMMEAGF+PN++ LV                   SVLGACGELGDL+LGTWV   V+EN
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN

XP_022153282.1 pentatricopeptide repeat-containing protein At2g34400 [Momordica charantia]

8.5e-13

54.88

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMENDGVV
        M+ GY+KM+Y  EAVGLFREMM AGFEPN++ LV                   SVLGACGELGDL+LGTWV   V+EN  V+
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMENDGVV

XP_022997564.1 pentatricopeptide repeat-containing protein At2g34400 [Cucurbita maxima]

2.7e-11

52.56

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN
        M+ GY+KM++  EAVGLF +MM+AGFEPN++ LV                   SVLGACGELGDL+LGTWV   VM+N
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN

XP_038889591.1 pentatricopeptide repeat-containing protein At2g34400 [Benincasa hispida]

2.2e-13

54.88

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMENDGVV
        M+ GY+KM++ GEAVGLFREMMEAGF+PN++ LV                   SVLGACGELGDL+LGTWV   V+EN  V+
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMENDGVV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMG0 Uncharacterized protein

1.9e-13

56.41

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN
        M+ GY+KM++ GEAVGLFREMMEAGF+PN++ LV                   SVLGACGELGDL+LGTWV   V+EN
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN

A0A1S3BRJ2 pentatricopeptide repeat-containing protein At2g34400

1.9e-13

56.41

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN
        M+ GY+KM++ GEAVGLFREMMEAGF+PN++ LV                   SVLGACGELGDL+LGTWV   V+EN
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN

A0A6J1DIG6 pentatricopeptide repeat-containing protein At2g34400

4.1e-13

54.88

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMENDGVV
        M+ GY+KM+Y  EAVGLFREMM AGFEPN++ LV                   SVLGACGELGDL+LGTWV   V+EN  V+
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMENDGVV

A0A6J1EUW3 pentatricopeptide repeat-containing protein At2g34400

1.7e-11

51.28

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN
        M+ GY+KM++  EAVGLFR+MM+AGF+PN++ LV                   SVLGACGELGDL+LGTWV   V++N
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN

A0A6J1KBU4 pentatricopeptide repeat-containing protein At2g34400

1.3e-11

52.56

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN
        M+ GY+KM++  EAVGLF +MM+AGFEPN++ LV                   SVLGACGELGDL+LGTWV   VM+N
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMEN

SwissProt top hits

e value

%identity

Alignment

O64705 Pentatricopeptide repeat-containing protein At2g34400

2.6e-04

39.71

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLG
        M+ GY++  Y  +A+ LFR+M E GFEP++  LV                   S+LGAC  LGDLR G
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLG

Arabidopsis top hits

e value

%identity

Alignment

AT2G20540.1 mitochondrial editing factor 21

3.5e-04

35.21

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWV
        M+ GY  +    EA+  FREM  AG EP++I L+                   SVL +C +LG L LG W+
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWV

AT2G34400.1 Pentatricopeptide repeat (PPR-like) superfamily protein

1.8e-05

39.71

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Query:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLG
        M+ GY++  Y  +A+ LFR+M E GFEP++  LV                   S+LGAC  LGDLR G
Subjt:  MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLG

Sequences

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CDS sequence

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ATGATGTTGGGTTACGCGAAGATGAAGTATGTTGGTGAAGCTGTGGGTTTGTTTAGAGAGATGATGGAAGCTGGGTTTGAGCCCAATGACATAATCTTAGTTATGGAAGT
TGGGTTTGAGCTGGGTGAGATGATGGAAACTGAGTTTATGGCTGACTTTAGTGTTTTGGGGGCGTGTGGAGAGCTGGGGGATTTGAGACTCGGCACTTGGGTGGGAGCGT
TGGTGATGGAGAATGATGGTGTTGTATTGTTACATGAGTGCTGCATGGATCCATACGTATGGGAAGTGGTGATTTTAGTGAAGGAGGATTAG

mRNA sequence

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Protein sequence

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MMLGYAKMKYVGEAVGLFREMMEAGFEPNDIILVMEVGFELGEMMETEFMADFSVLGACGELGDLRLGTWVGALVMENDGVVLLHECCMDPYVWEVVILVKED

CaUC04G078630 (gene) of Watermelon (USVL246-FR2) v1 genome