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CaUC05G079130 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G079130
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCiama_Chr05:304584..305390
RNA-Seq ExpressionCaUC05G079130
SyntenyCaUC05G079130
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031882.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]2.2e-1066.04Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKG
        +L     V+++RERFEALSAPL HL DEVLESTFLNGLDPE++ E++ YEP G
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKG

RVW41094.1 hypothetical protein CK203_069772 [Vitis vinifera]1.4e-0632.58Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLAR----------AVRPSGPALKSPAKAIKAA---------
        +RQ   +  YR  FE L+ PL  + +EV+ESTF+NGL PE+R E+   +P G  + M    R          A  P+GP      K + +A         
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLAR----------AVRPSGPALKSPAKAIKAA---------

Query:  --PIRSITLSNPLPYQKKEVPFKRLSYVELQA
            R++ +      Q++E+P KRL+  ELQA
Subjt:  --PIRSITLSNPLPYQKKEVPFKRLSYVELQA

RVW50870.1 Pentatricopeptide repeat-containing protein [Vitis vinifera]1.9e-0634.11Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLAR----------AVRPSGP--------ALKSPAKAIKAAP
        +RQ   V+ YR  FE L+ PL  +L+EV+ESTF+NGL PE+R E+   +  G  + M    R          A  P+GP          +   K  K   
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLAR----------AVRPSGP--------ALKSPAKAIKAAP

Query:  IRSITLSNPLPYQKKEVPFKRLSYVELQA
         R++ +      Q++E+P KRL+  ELQA
Subjt:  IRSITLSNPLPYQKKEVPFKRLSYVELQA

TYJ98385.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]4.2e-0635.04Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ
        +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +R E+    PKG +  M Q+A+ +    +P    + +  +     P+ +ITL N    +
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ

Query:  -KKEVPFKRLSYVELQA
         +KE  F+RL   E QA
Subjt:  -KKEVPFKRLSYVELQA

XP_022131713.1 uncharacterized protein LOC111004816 [Momordica charantia]1.9e-0633.09Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKG------------------QSNPMCQLARAVRPSGPALKSPAKAIKAAP
        ++Q   V EY+E FEALSA  PHL++EVLES +LNGL+P +R E++  +P G                  Q N      R  +     +K   K  +   
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKG------------------QSNPMCQLARAVRPSGPALKSPAKAIKAAP

Query:  IRSITLSNP----------LPYQKKEVPFKRLSYVE
         RS+TL++           +P  KKE  +KRL+  E
Subjt:  IRSITLSNP----------LPYQKKEVPFKRLSYVE

TrEMBL top hitse value%identityAlignment
A0A438E000 Retrotrans_gag domain-containing protein7.0e-0732.58Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLAR----------AVRPSGPALKSPAKAIKAA---------
        +RQ   +  YR  FE L+ PL  + +EV+ESTF+NGL PE+R E+   +P G  + M    R          A  P+GP      K + +A         
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLAR----------AVRPSGPALKSPAKAIKAA---------

Query:  --PIRSITLSNPLPYQKKEVPFKRLSYVELQA
            R++ +      Q++E+P KRL+  ELQA
Subjt:  --PIRSITLSNPLPYQKKEVPFKRLSYVELQA

A0A438ET29 Pentatricopeptide repeat-containing protein9.1e-0734.11Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLAR----------AVRPSGP--------ALKSPAKAIKAAP
        +RQ   V+ YR  FE L+ PL  +L+EV+ESTF+NGL PE+R E+   +  G  + M    R          A  P+GP          +   K  K   
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLAR----------AVRPSGP--------ALKSPAKAIKAAP

Query:  IRSITLSNPLPYQKKEVPFKRLSYVELQA
         R++ +      Q++E+P KRL+  ELQA
Subjt:  IRSITLSNPLPYQKKEVPFKRLSYVELQA

A0A5A7SLB5 Gypsy/ty3 element polyprotein1.0e-1066.04Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKG
        +L     V+++RERFEALSAPL HL DEVLESTFLNGLDPE++ E++ YEP G
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKG

A0A5D3BJ44 Retrotransposon protein, putative, unclassified2.0e-0635.04Show/hide
Query:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ
        +++Q S V EYR  F+ L APL  + ++V+E TF+NGL P +R E+    PKG +  M Q+A+ +    +P    + +  +     P+ +ITL N    +
Subjt:  KLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMCQLARAV----RPSGPALKSPAKAIKAAPIRSITLSNPLPYQ

Query:  -KKEVPFKRLSYVELQA
         +KE  F+RL   E QA
Subjt:  -KKEVPFKRLSYVELQA

A0A6J1BU87 uncharacterized protein LOC1110048169.1e-0733.09Show/hide
Query:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKG------------------QSNPMCQLARAVRPSGPALKSPAKAIKAAP
        ++Q   V EY+E FEALSA  PHL++EVLES +LNGL+P +R E++  +P G                  Q N      R  +     +K   K  +   
Subjt:  LRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKG------------------QSNPMCQLARAVRPSGPALKSPAKAIKAAP

Query:  IRSITLSNP----------LPYQKKEVPFKRLSYVE
         RS+TL++           +P  KKE  +KRL+  E
Subjt:  IRSITLSNP----------LPYQKKEVPFKRLSYVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAACACGCCCTACCGAAAAGGAAGTTCCCGGGGGGAGAAGGCAAGAGCTCAGGAGCAAGAGTGGAGCGAGAAACAGGGAGTTAAAGAACGAAAACAGAGGAAGGA
GCTGAGAGATATTTTGACATCCATCAACTATTTGATTCATAGAAAATTACGGCAGCTGAGCATGGTGTCAGAGTACAGAGAGCGCTTCGAGGCTCTTTCGGCACCCTTAC
CTCACCTTCTGGATGAAGTCTTGGAAAGCACGTTTCTTAACGGGTTGGACCCTGAGGTCAGAGTTGAAATCATCTGTTATGAGCCCAAGGGGCAATCAAACCCTATGTGT
CAATTGGCCAGGGCCGTACGCCCTAGTGGGCCTGCCTTGAAAAGCCCAGCGAAGGCGATTAAGGCAGCTCCTATACGTTCAATCACGTTGTCAAACCCACTGCCATACCA
GAAGAAAGAAGTTCCTTTTAAACGACTATCATATGTTGAGTTGCAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAACACGCCCTACCGAAAAGGAAGTTCCCGGGGGGAGAAGGCAAGAGCTCAGGAGCAAGAGTGGAGCGAGAAACAGGGAGTTAAAGAACGAAAACAGAGGAAGGA
GCTGAGAGATATTTTGACATCCATCAACTATTTGATTCATAGAAAATTACGGCAGCTGAGCATGGTGTCAGAGTACAGAGAGCGCTTCGAGGCTCTTTCGGCACCCTTAC
CTCACCTTCTGGATGAAGTCTTGGAAAGCACGTTTCTTAACGGGTTGGACCCTGAGGTCAGAGTTGAAATCATCTGTTATGAGCCCAAGGGGCAATCAAACCCTATGTGT
CAATTGGCCAGGGCCGTACGCCCTAGTGGGCCTGCCTTGAAAAGCCCAGCGAAGGCGATTAAGGCAGCTCCTATACGTTCAATCACGTTGTCAAACCCACTGCCATACCA
GAAGAAAGAAGTTCCTTTTAAACGACTATCATATGTTGAGTTGCAAGCTTGA
Protein sequenceShow/hide protein sequence
MRNTPYRKGSSRGEKARAQEQEWSEKQGVKERKQRKELRDILTSINYLIHRKLRQLSMVSEYRERFEALSAPLPHLLDEVLESTFLNGLDPEVRVEIICYEPKGQSNPMC
QLARAVRPSGPALKSPAKAIKAAPIRSITLSNPLPYQKKEVPFKRLSYVELQA