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CaUC05G080660 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G080660
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
Genome locationCiama_Chr05:1617193..1620252
RNA-Seq ExpressionCaUC05G080660
SyntenyCaUC05G080660
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582613.1 Mediator of RNA polymerase II transcription subunit 12, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0551.32Show/hide
Query:  IDFGSNRGIVVVVVISIKLKSQSPQAPRPFFSLHEFLHFFCSRNCKQAFSVFLFTSFHGSQISHSFALQVKSQYCI
        I  GSNRG  VVVVIS+KLKSQSPQAPRPFFSL EF HF     C      F F SF   +    ++L  +   C+
Subjt:  IDFGSNRGIVVVVVISIKLKSQSPQAPRPFFSLHEFLHFFCSRNCKQAFSVFLFTSFHGSQISHSFALQVKSQYCI
KAG7019005.1 hypothetical protein SDJN02_20882, partial [Cucurbita argyrosperma subsp. argyrosperma]4.2e-0552.05Show/hide
Query:  GSNRGIVVVVVISIKLKSQSPQAPRPFFSLHEFLHFFCSRNCKQAFSVFLFTSFHGSQISHSFALQVKSQYCI
        GSNRG  VVVVIS+KLKSQS QAPRPFFSL EF HF     C      FLF SF   +    ++L  +   C+
Subjt:  GSNRGIVVVVVISIKLKSQSPQAPRPFFSLHEFLHFFCSRNCKQAFSVFLFTSFHGSQISHSFALQVKSQYCI
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATGCTTTAGCTTCACTTTCCCCTTCTCTCTATTTTTGGTTCGGTTTAAGAAGTTTTCGTTGGTTTTAGTTGGTTTGGTGATTGATTTTGGAAGTAACAGAGGCAT
CGTCGTCGTCGTCGTCATCAGCATTAAGCTGAAGAGTCAAAGCCCTCAAGCCCCGAGACCCTTCTTCTCCCTTCACGAATTCCTCCATTTTTTTTGCTCTCGAAACTGTA
AGCAAGCTTTTTCCGTTTTCCTTTTTACATCCTTTCATGGCTCCCAAATCTCGCACAGTTTCGCCTTGCAAGTGAAATCCCAATATTGTATTTTTGTTGTTGTTTCCTTT
CTGGTTTCTCAAAGTCCCCTTCTTTGTTTGTATCTTCTGAATCGCACAGAAAACCCTTGCTCCATTGCGCACTCATACCCAATTATTCACTCCCGGAAGAACCGGCTTGC
TGTGTCGAACCTGGGATCAGGTTTTTCCCTAAACCCTAATCACGTATCTCTTCCCTTGAAATTTAGGGTTTATAGTAGTTCTTTCTGCACTGTTTATGAGCTTACTCTGC
CAAGTGCCAACAAACTTCAATGTGTAGGCATCATCTTCGCTCGTACTTTAAAGATAGGGTGTTTCTCTCTAACCTTAATGTGTCACGCTGAGCGTAGTTTACTCTTTTCA
GTCTTGGTGCACGTATGCTATATCAGCATTGTCACTCTGCCGACTTATACTGGATTAAAATTTAAACTGCAAACTTATGGACTGCAGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAATGCTTTAGCTTCACTTTCCCCTTCTCTCTATTTTTGGTTCGGTTTAAGAAGTTTTCGTTGGTTTTAGTTGGTTTGGTGATTGATTTTGGAAGTAACAGAGGCAT
CGTCGTCGTCGTCGTCATCAGCATTAAGCTGAAGAGTCAAAGCCCTCAAGCCCCGAGACCCTTCTTCTCCCTTCACGAATTCCTCCATTTTTTTTGCTCTCGAAACTGTA
AGCAAGCTTTTTCCGTTTTCCTTTTTACATCCTTTCATGGCTCCCAAATCTCGCACAGTTTCGCCTTGCAAGTGAAATCCCAATATTGTATTTTTGTTGTTGTTTCCTTT
CTGGTTTCTCAAAGTCCCCTTCTTTGTTTGTATCTTCTGAATCGCACAGAAAACCCTTGCTCCATTGCGCACTCATACCCAATTATTCACTCCCGGAAGAACCGGCTTGC
TGTGTCGAACCTGGGATCAGGTTTTTCCCTAAACCCTAATCACGTATCTCTTCCCTTGAAATTTAGGGTTTATAGTAGTTCTTTCTGCACTGTTTATGAGCTTACTCTGC
CAAGTGCCAACAAACTTCAATGTGTAGGCATCATCTTCGCTCGTACTTTAAAGATAGGGTGTTTCTCTCTAACCTTAATGTGTCACGCTGAGCGTAGTTTACTCTTTTCA
GTCTTGGTGCACGTATGCTATATCAGCATTGTCACTCTGCCGACTTATACTGGATTAAAATTTAAACTGCAAACTTATGGACTGCAGATTTAA
Protein sequenceShow/hide protein sequence
MQCFSFTFPFSLFLVRFKKFSLVLVGLVIDFGSNRGIVVVVVISIKLKSQSPQAPRPFFSLHEFLHFFCSRNCKQAFSVFLFTSFHGSQISHSFALQVKSQYCIFVVVSF
LVSQSPLLCLYLLNRTENPCSIAHSYPIIHSRKNRLAVSNLGSGFSLNPNHVSLPLKFRVYSSSFCTVYELTLPSANKLQCVGIIFARTLKIGCFSLTLMCHAERSLLFS
VLVHVCYISIVTLPTYTGLKFKLQTYGLQI