; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC05G080680 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G080680
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPentatricopeptide repeat-containing protein, putative
Genome locationCiama_Chr05:1634556..1637970
RNA-Seq ExpressionCaUC05G080680
SyntenyCaUC05G080680
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000008 - C2 domain
IPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR035892 - C2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048969.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.4e-12159.9Show/hide
Query:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPT-----LVVFYCTLGRIKLGKHVFDEISTKEVICLS
        +A   FKMM S   +P+  T  +           ++ AC   G   E  +  +    + G T  T     LV FYCTLGRIKLG+HVFDEISTK++IC +
Subjt:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPT-----LVVFYCTLGRIKLGKHVFDEISTKEVICLS

Query:  STIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE---------------------------------------------------
        + IKGYG+NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKE                                                   
Subjt:  STIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE---------------------------------------------------

Query:  --------------------ELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATV
                            + VSLKISVNALGSPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNE+VGATV
Subjt:  --------------------ELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATV

Query:  IHLGGIISEGYERGFIEVRPSPYNVVLEDDDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        IHLGGI+SEGYERGFIEVRP+PYNVVLE+D+TYKGEIK+GFKFF KEEI LMEARE +ADGK QRKPICSK MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  IHLGGIISEGYERGFIEVRPSPYNVVLEDDDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

KAA0048969.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.1e-1237.14Show/hide
Query:  SAFGFFKMMFSNGHRPDHVTM------------------------------------------------------HNIPYKDVVLWSVMISACVKNGQYN
        SAFGFFKMMFSNGHRP++VTM                                                      + IP KDVV WS +ISACVKNGQY+
Subjt:  SAFGFFKMMFSNGHRPDHVTM------------------------------------------------------HNIPYKDVVLWSVMISACVKNGQYN

Query:  EAFDIFREMQNQGGSTKPTLVVFY----CTLGRIKLGKHV
        EAFD+ REMQ+QG       +V         G + LGK +
Subjt:  EAFDIFREMQNQGGSTKPTLVVFY----CTLGRIKLGKHV

KAA0048969.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.9e-11151.21Show/hide
Query:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTK----PTLVVFYCTLGRIKLGKHVFDEISTKEVICLSS
        +A   FK M S   +P+ +T  +           +++AC   G       I   +   G S+       LV FYCTLGRI LGKHVFDEIS K+VIC ++
Subjt:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTK----PTLVVFYCTLGRIKLGKHVFDEISTKEVICLSS

Query:  TIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE----------------------------------------------------
         IKGYGMNGCG+EALNTFSDMLSYGLKPNGVVFVSLLSACA CGLEKE                                                    
Subjt:  TIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE----------------------------------------------------

Query:  ----------------------ELVSLKIS----------------------------------------------------VNALGSPAYYVMVECGNH
                              +L   K +                                                     N LGSPAYYVMVECGNH
Subjt:  ----------------------ELVSLKIS----------------------------------------------------VNALGSPAYYVMVECGNH

Query:  ERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLEDDDTYKGEIKVGFKFFTK
        E RT+VSSGKHE+ACWNEKFSFELPT+DWKNI+HIKFRI+ETKLL+NE+VGATVIHL GIISEGYERGFIEVRP+PYNVVLEDDDTYKGEIK+GFKFFTK
Subjt:  ERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLEDDDTYKGEIKVGFKFFTK

Query:  EEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        EEI LME RE +ADGK QRKPICS +MN+WRIVWLKLL LIGH+NSSSERKQQ
Subjt:  EEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

XP_016898949.1 PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo]2.1e-10950Show/hide
Query:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPT-----LVVFYCTLGRIKLGKHVFDEISTKEVICLS
        +A   FKMM S   +P+  T  +           ++ AC   G   E  +  +    + G T  T     LV FYCTLGRIKLG+HVFDEISTK++IC +
Subjt:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPT-----LVVFYCTLGRIKLGKHVFDEISTKEVICLS

Query:  STIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEE--------------------------------------------------
        + IKGYG+NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKE                                                   
Subjt:  STIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEE--------------------------------------------------

Query:  -----LVSLKIS-----------------------------------------------------------------------------------VNALG
             L+  K++                                                                                    N LG
Subjt:  -----LVSLKIS-----------------------------------------------------------------------------------VNALG

Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLEDDDTY
        SPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRP+PYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFF KEEI LMEARE +ADGK QRKPICSK MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

XP_016898949.1 PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo]3.1e-1237.14Show/hide
Query:  SAFGFFKMMFSNGHRPDHVTM------------------------------------------------------HNIPYKDVVLWSVMISACVKNGQYN
        SAFGFFKMMFSNGHRP++VTM                                                      + IP KDVV WS +ISACVKNGQY+
Subjt:  SAFGFFKMMFSNGHRPDHVTM------------------------------------------------------HNIPYKDVVLWSVMISACVKNGQYN

Query:  EAFDIFREMQNQGGSTKPTLVVFY----CTLGRIKLGKHV
        EAFD+ REMQ+QG       +V         G + LGK +
Subjt:  EAFDIFREMQNQGGSTKPTLVVFY----CTLGRIKLGKHV

XP_016898949.1 PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo]2.2e-8287.06Show/hide
Query:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLED
        N LGSPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTS WKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRP+PYNVVLE+
Subjt:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLED

Query:  DDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        D+TYKGEIK+GFKFF KEEI LMEARE +ADGK QR PICSK MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  DDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

XP_031738550.1 16 kDa phloem protein 2 isoform X2 [Cucumis sativus]7.7e-8084.12Show/hide
Query:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLED
        N LGSPAYYV VECGNHERRT+VSSGKHE ACWNEKFSFELPTSDW NITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERG IEV P+PYNVVLE+
Subjt:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLED

Query:  DDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        D+TYKGEIK+GFKFFTKEEI L EARE +ADGK QR+PICSK++NLWRIVWLKL C I HKNSSS +K+Q
Subjt:  DDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

TrEMBL top hitse value%identityAlignment
A0A1S4DSI8 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g565701.5e-1237.14Show/hide
Query:  SAFGFFKMMFSNGHRPDHVTM------------------------------------------------------HNIPYKDVVLWSVMISACVKNGQYN
        SAFGFFKMMFSNGHRP++VTM                                                      + IP KDVV WS +ISACVKNGQY+
Subjt:  SAFGFFKMMFSNGHRPDHVTM------------------------------------------------------HNIPYKDVVLWSVMISACVKNGQYN

Query:  EAFDIFREMQNQGGSTKPTLVVFY----CTLGRIKLGKHV
        EAFD+ REMQ+QG       +V         G + LGK +
Subjt:  EAFDIFREMQNQGGSTKPTLVVFY----CTLGRIKLGKHV

A0A1S4DSI8 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g565709.4e-8483.8Show/hide
Query:  ELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRP
        +LVSLK+SV+ALGSPAYYV VECGNHERRT+VSSGKHE ACWNEKFSFELPTSDW NITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERG IEV P
Subjt:  ELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRP

Query:  SPYNVVLEDDDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        +PYNVVLE+D+TYKGEIK+GFKFFTKEEI L EARE +ADGK QR+PICSK++NLWRIVWLKL C I HKNSSS +K+Q
Subjt:  SPYNVVLEDDDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

A0A5A7U647 Putative pentatricopeptide repeat-containing protein1.1e-12159.9Show/hide
Query:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPT-----LVVFYCTLGRIKLGKHVFDEISTKEVICLS
        +A   FKMM S   +P+  T  +           ++ AC   G   E  +  +    + G T  T     LV FYCTLGRIKLG+HVFDEISTK++IC +
Subjt:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPT-----LVVFYCTLGRIKLGKHVFDEISTKEVICLS

Query:  STIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE---------------------------------------------------
        + IKGYG+NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKE                                                   
Subjt:  STIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE---------------------------------------------------

Query:  --------------------ELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATV
                            + VSLKISVNALGSPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNE+VGATV
Subjt:  --------------------ELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATV

Query:  IHLGGIISEGYERGFIEVRPSPYNVVLEDDDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        IHLGGI+SEGYERGFIEVRP+PYNVVLE+D+TYKGEIK+GFKFF KEEI LMEARE +ADGK QRKPICSK MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  IHLGGIISEGYERGFIEVRPSPYNVVLEDDDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

A0A5A7U647 Putative pentatricopeptide repeat-containing protein1.5e-1237.14Show/hide
Query:  SAFGFFKMMFSNGHRPDHVTM------------------------------------------------------HNIPYKDVVLWSVMISACVKNGQYN
        SAFGFFKMMFSNGHRP++VTM                                                      + IP KDVV WS +ISACVKNGQY+
Subjt:  SAFGFFKMMFSNGHRPDHVTM------------------------------------------------------HNIPYKDVVLWSVMISACVKNGQYN

Query:  EAFDIFREMQNQGGSTKPTLVVFY----CTLGRIKLGKHV
        EAFD+ REMQ+QG       +V         G + LGK +
Subjt:  EAFDIFREMQNQGGSTKPTLVVFY----CTLGRIKLGKHV

A0A5A7U647 Putative pentatricopeptide repeat-containing protein1.0e-10950Show/hide
Query:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPT-----LVVFYCTLGRIKLGKHVFDEISTKEVICLS
        +A   FKMM S   +P+  T  +           ++ AC   G   E  +  +    + G T  T     LV FYCTLGRIKLG+HVFDEISTK++IC +
Subjt:  SAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKPT-----LVVFYCTLGRIKLGKHVFDEISTKEVICLS

Query:  STIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEE--------------------------------------------------
        + IKGYG+NGCG++ALNTFSDMLSYGLKPNGVVF SLLSACA CGLEKE                                                   
Subjt:  STIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEE--------------------------------------------------

Query:  -----LVSLKIS-----------------------------------------------------------------------------------VNALG
             L+  K++                                                                                    N LG
Subjt:  -----LVSLKIS-----------------------------------------------------------------------------------VNALG

Query:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLEDDDTY
        SPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRP+PYNVVLE+D+TY
Subjt:  SPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLEDDDTY

Query:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        KGEIK+GFKFF KEEI LMEARE +ADGK QRKPICSK MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  KGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

A0A5D3D0Z7 Putative pentatricopeptide repeat-containing protein1.0e-8287.06Show/hide
Query:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLED
        N LGSPAYYV VECGNHE RT+VSSGKHE ACWNEKFSFELPTS WKNITHIKFRIMETKLLNNE+VGATVIHLGGI+SEGYERGFIEVRP+PYNVVLE+
Subjt:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLED

Query:  DDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        D+TYKGEIK+GFKFF KEEI LMEARE +ADGK QR PICSK MNLWRIVWLKL C IGHKNSSSERK Q
Subjt:  DDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

A0A6J1ISM2 uncharacterized protein LOC111479016 isoform X24.0e-7480.59Show/hide
Query:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLED
        N  GS AYYVMVECGN E RT+VSSGKHE  CWNEKFSFELP+SDWKNITHIKFRIME K L+NE+VGA +IHLGGIISEGYERGFIEVRP+PYNVVLE+
Subjt:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLED

Query:  DDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ
        DDTYKGEIK+GFKFFTKEEI  MEARE +AD KQ+RK I  KVMNLWR VWLKLLCL GHK  SS +KQQ
Subjt:  DDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ

SwissProt top hitse value%identityAlignment
O04590 Pentatricopeptide repeat-containing protein At1g62260, mitochondrial3.1e-1529.35Show/hide
Query:  PYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP--------------------------------------TLVVFYCTLGRIKLGKHVFDEI
        P K  V W+ +I+A  KN  Y EA D+F  M  +G    P                                       L+  Y   G I   + +FDE+
Subjt:  PYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP--------------------------------------TLVVFYCTLGRIKLGKHVFDEI

Query:  STK-EVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGL---EKEELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHE
          K EVI  ++ I GY  +G  SEALN F  M S G+ P+ + FVS+L+ACAH GL    K + VS+           Y +  +  ++     V+SG+ +
Subjt:  STK-EVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGL---EKEELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHE

Query:  F
        F
Subjt:  F

O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic5.3e-1528.05Show/hide
Query:  MHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGG----------------------------------------STKPTLVVFYCTLGRIKLGK
        ++++P KD+V W+ +ISA  +NG+ NEA  +F E+Q Q                                               L+  Y   G ++  +
Subjt:  MHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGG----------------------------------------STKPTLVVFYCTLGRIKLGK

Query:  HVFDEISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
         VF+ +  ++V   S+ I G  M+GCG+EA++ F  M    +KPNGV F ++  AC+H GL  E
Subjt:  HVFDEISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

Q9C8L6 Pentatricopeptide repeat-containing protein At1g53600, mitochondrial4.0e-1531.49Show/hide
Query:  IPYKDVVLWSVMISACVKNGQYNEAF-----------------------------DIFREMQNQGG----------STKPTLVVFYCTLGRIKLGKHVFD
        +P KD + W+ MISA V NG Y EA                              D+   +Q  G           S + +LV  YC  G       +F 
Subjt:  IPYKDVVLWSVMISACVKNGQYNEAF-----------------------------DIFREMQNQGG----------STKPTLVVFYCTLGRIKLGKHVFD

Query:  EISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCG---LEKEELVSLKISVNALGSPAYY
         IS   ++  ++ I GY  NG G +AL  FS + S G +PNGV F++LLSAC H G   L  +   S+K S N    P +Y
Subjt:  EISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCG---LEKEELVSLKISVNALGSPAYY

Q9CA54 Pentatricopeptide repeat-containing protein At1g746302.4e-1529.81Show/hide
Query:  IPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG---------------------------------------GSTKPTLVVFYCTLGRIKLGKHVFD
        +P++D V WS MI     NG +NE+F  FRE+Q  G                                        S    L+  Y   G + + + VF+
Subjt:  IPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG---------------------------------------GSTKPTLVVFYCTLGRIKLGKHVFD

Query:  EISTKE-VICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
         +  K  ++  +S I G  M+G G EA+  F++M +YG+ P+G+ F+SLL AC+H GL +E
Subjt:  EISTKE-VICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

Q9STF3 Pentatricopeptide repeat-containing protein At3g46790, chloroplastic3.6e-1630.25Show/hide
Query:  IPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP-----------------------------------------TLVVFYCTLGRIKLGKHV
        +P ++VV WS MI+   KNG+  EA   FREM  +   + P                                          LV  Y   G++++G+ V
Subjt:  IPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP-----------------------------------------TLVVFYCTLGRIKLGKHV

Query:  FDEISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        FD +  ++V+  +S I  YG++G G +A+  F +ML+ G  P  V FVS+L AC+H GL +E
Subjt:  FDEISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

Arabidopsis top hitse value%identityAlignment
AT1G53600.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.9e-1631.49Show/hide
Query:  IPYKDVVLWSVMISACVKNGQYNEAF-----------------------------DIFREMQNQGG----------STKPTLVVFYCTLGRIKLGKHVFD
        +P KD + W+ MISA V NG Y EA                              D+   +Q  G           S + +LV  YC  G       +F 
Subjt:  IPYKDVVLWSVMISACVKNGQYNEAF-----------------------------DIFREMQNQGG----------STKPTLVVFYCTLGRIKLGKHVFD

Query:  EISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCG---LEKEELVSLKISVNALGSPAYY
         IS   ++  ++ I GY  NG G +AL  FS + S G +PNGV F++LLSAC H G   L  +   S+K S N    P +Y
Subjt:  EISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCG---LEKEELVSLKISVNALGSPAYY

AT1G62260.1 mitochondrial editing factor 92.2e-1629.35Show/hide
Query:  PYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP--------------------------------------TLVVFYCTLGRIKLGKHVFDEI
        P K  V W+ +I+A  KN  Y EA D+F  M  +G    P                                       L+  Y   G I   + +FDE+
Subjt:  PYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP--------------------------------------TLVVFYCTLGRIKLGKHVFDEI

Query:  STK-EVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGL---EKEELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHE
          K EVI  ++ I GY  +G  SEALN F  M S G+ P+ + FVS+L+ACAH GL    K + VS+           Y +  +  ++     V+SG+ +
Subjt:  STK-EVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGL---EKEELVSLKISVNALGSPAYYVMVECGNHERRTRVSSGKHE

Query:  F
        F
Subjt:  F

AT1G74630.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.7e-1629.81Show/hide
Query:  IPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG---------------------------------------GSTKPTLVVFYCTLGRIKLGKHVFD
        +P++D V WS MI     NG +NE+F  FRE+Q  G                                        S    L+  Y   G + + + VF+
Subjt:  IPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQG---------------------------------------GSTKPTLVVFYCTLGRIKLGKHVFD

Query:  EISTKE-VICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
         +  K  ++  +S I G  M+G G EA+  F++M +YG+ P+G+ F+SLL AC+H GL +E
Subjt:  EISTKE-VICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.6e-1730.25Show/hide
Query:  IPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP-----------------------------------------TLVVFYCTLGRIKLGKHV
        +P ++VV WS MI+   KNG+  EA   FREM  +   + P                                          LV  Y   G++++G+ V
Subjt:  IPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGSTKP-----------------------------------------TLVVFYCTLGRIKLGKHV

Query:  FDEISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE
        FD +  ++V+  +S I  YG++G G +A+  F +ML+ G  P  V FVS+L AC+H GL +E
Subjt:  FDEISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKE

AT4G00467.1 Calcium-dependent lipid-binding (CaLB domain) family protein4.5e-3844.38Show/hide
Query:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNN-ETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLE
        N +G+P YYV+++CG  E R+++S G ++ A WN+KF F+ P S WK +T+IK RI++ +L N+   VG T+IHLGGII+EG +RG+IE++P+PYNVVLE
Subjt:  NALGSPAYYVMVECGNHERRTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNN-ETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLE

Query:  DDDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRI-------VWLKLLCLIGHK
         DDT+KGE+KVG +F   +++   +A EL  + K   + + S + NL ++        W +  CLI  K
Subjt:  DDDTYKGEIKVGFKFFTKEEITLMEARELLADGKQQRKPICSKVMNLWRI-------VWLKLLCLIGHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGTCACCTCTGTCCGAGATTCCGCTGGTTTTCCTTTCAGGAAGAATCCTCAATCTATTATCCATAGAATAAAGATTTGGTATTTATCCTTCTTCCCGGCTGATAT
ATGTTGTGCTTTTCGAGATGTGCACGCAACCTACTCTGCTTTTGGCTTCTTCAAGATGATGTTCTCAAATGGGCACAGGCCAGATCATGTGACAATGCACAACATACCTT
ACAAGGATGTTGTTTTGTGGAGTGTCATGATCTCAGCATGCGTGAAAAATGGTCAGTATAATGAAGCATTTGATATTTTCAGAGAGATGCAAAATCAGGGAGGTTCAACC
AAACCAACTTTGGTTGTTTTTTACTGCACACTTGGAAGGATAAAGCTAGGAAAACACGTTTTTGATGAGATTTCTACGAAGGAAGTAATTTGTTTGAGTTCGACGATTAA
AGGGTACGGAATGAATGGATGTGGGAGTGAGGCACTCAATACATTTTCAGACATGTTAAGTTATGGTTTAAAGCCTAATGGGGTGGTCTTCGTCTCTCTTTTATCTGCTT
GTGCTCATTGTGGATTGGAAAAGGAAGAGCTCGTAAGTTTGAAAATATCAGTAAATGCTTTAGGTTCCCCAGCATATTACGTGATGGTAGAATGTGGAAATCATGAACGT
AGAACAAGAGTATCATCAGGTAAACATGAATTTGCTTGTTGGAATGAGAAGTTTTCATTTGAACTCCCTACATCTGATTGGAAGAACATAACTCATATCAAATTCAGAAT
CATGGAAACAAAATTGCTGAACAATGAAACCGTCGGAGCTACCGTAATCCACCTTGGTGGAATAATTTCAGAGGGTTATGAAAGAGGATTCATAGAAGTTAGGCCATCTC
CATACAACGTGGTGCTCGAGGATGACGACACTTACAAGGGAGAAATAAAAGTAGGATTCAAATTCTTCACCAAAGAAGAAATAACACTAATGGAAGCAAGAGAGTTACTT
GCAGATGGGAAGCAGCAAAGAAAACCGATCTGCAGCAAAGTTATGAACTTGTGGAGAATTGTATGGTTAAAGTTATTGTGCCTCATTGGCCACAAGAATTCTTCCAGTGA
ACGAAAGCAACAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGTCACCTCTGTCCGAGATTCCGCTGGTTTTCCTTTCAGGAAGAATCCTCAATCTATTATCCATAGAATAAAGATTTGGTATTTATCCTTCTTCCCGGCTGATAT
ATGTTGTGCTTTTCGAGATGTGCACGCAACCTACTCTGCTTTTGGCTTCTTCAAGATGATGTTCTCAAATGGGCACAGGCCAGATCATGTGACAATGCACAACATACCTT
ACAAGGATGTTGTTTTGTGGAGTGTCATGATCTCAGCATGCGTGAAAAATGGTCAGTATAATGAAGCATTTGATATTTTCAGAGAGATGCAAAATCAGGGAGGTTCAACC
AAACCAACTTTGGTTGTTTTTTACTGCACACTTGGAAGGATAAAGCTAGGAAAACACGTTTTTGATGAGATTTCTACGAAGGAAGTAATTTGTTTGAGTTCGACGATTAA
AGGGTACGGAATGAATGGATGTGGGAGTGAGGCACTCAATACATTTTCAGACATGTTAAGTTATGGTTTAAAGCCTAATGGGGTGGTCTTCGTCTCTCTTTTATCTGCTT
GTGCTCATTGTGGATTGGAAAAGGAAGAGCTCGTAAGTTTGAAAATATCAGTAAATGCTTTAGGTTCCCCAGCATATTACGTGATGGTAGAATGTGGAAATCATGAACGT
AGAACAAGAGTATCATCAGGTAAACATGAATTTGCTTGTTGGAATGAGAAGTTTTCATTTGAACTCCCTACATCTGATTGGAAGAACATAACTCATATCAAATTCAGAAT
CATGGAAACAAAATTGCTGAACAATGAAACCGTCGGAGCTACCGTAATCCACCTTGGTGGAATAATTTCAGAGGGTTATGAAAGAGGATTCATAGAAGTTAGGCCATCTC
CATACAACGTGGTGCTCGAGGATGACGACACTTACAAGGGAGAAATAAAAGTAGGATTCAAATTCTTCACCAAAGAAGAAATAACACTAATGGAAGCAAGAGAGTTACTT
GCAGATGGGAAGCAGCAAAGAAAACCGATCTGCAGCAAAGTTATGAACTTGTGGAGAATTGTATGGTTAAAGTTATTGTGCCTCATTGGCCACAAGAATTCTTCCAGTGA
ACGAAAGCAACAGTAA
Protein sequenceShow/hide protein sequence
MRVTSVRDSAGFPFRKNPQSIIHRIKIWYLSFFPADICCAFRDVHATYSAFGFFKMMFSNGHRPDHVTMHNIPYKDVVLWSVMISACVKNGQYNEAFDIFREMQNQGGST
KPTLVVFYCTLGRIKLGKHVFDEISTKEVICLSSTIKGYGMNGCGSEALNTFSDMLSYGLKPNGVVFVSLLSACAHCGLEKEELVSLKISVNALGSPAYYVMVECGNHER
RTRVSSGKHEFACWNEKFSFELPTSDWKNITHIKFRIMETKLLNNETVGATVIHLGGIISEGYERGFIEVRPSPYNVVLEDDDTYKGEIKVGFKFFTKEEITLMEARELL
ADGKQQRKPICSKVMNLWRIVWLKLLCLIGHKNSSSERKQQ