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CaUC05G083080 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G083080
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA-directed RNA polymerase
Genome locationCiama_Chr05:3656778..3658729
RNA-Seq ExpressionCaUC05G083080
SyntenyCaUC05G083080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4384667.1 hypothetical protein F8388_003974 [Cannabis sativa]5.8e-0534.38Show/hide
Query:  RQQWILRPCFFDVLENDHGFADRVSAMDEHWNLLVNGIILQEKRAFVGEIFFYVLVWNAFESQSPNDSVSVRAWPSSMELHF---CHLQWRIFKFR
        +Q+   RP   DVL+N+     R+S ++++WNLLVN + LQ++  FV +I   VLV N F  QS +   +  A P   + H    C +  +  K R
Subjt:  RQQWILRPCFFDVLENDHGFADRVSAMDEHWNLLVNGIILQEKRAFVGEIFFYVLVWNAFESQSPNDSVSVRAWPSSMELHF---CHLQWRIFKFR
KAG6764620.1 hypothetical protein POTOM_032098 [Populus tomentosa]1.2e-1043.43Show/hide
Query:  EFPLSAAESPFLDDS--QHFQALILRILPIGRQQWILRPCFFDVLENDHGFADRVSAMDEHWNLLVNGIILQEKRAFVGEIFFYVLVWNAFESQSPNDS
        E PL     P  D    Q  Q+ ++R++    QQ IL P   DV +N+HG A+   AM++HW+LL N ++LQ++R FVG I FY L+WNA   QSP  S
Subjt:  EFPLSAAESPFLDDS--QHFQALILRILPIGRQQWILRPCFFDVLENDHGFADRVSAMDEHWNLLVNGIILQEKRAFVGEIFFYVLVWNAFESQSPNDS
TrEMBL top hitse value%identityAlignment
A0A6N2N206 DNA-directed RNA polymerase8.9e-1245.21Show/hide
Query:  ILPIGRQQWILRPCFFDVLENDHGFADRVSAMDEHWNLLVNGIILQEKRAFVGEIFFYVLVWNAFESQSPNDS
        ++ + RQQW+L P   DV +N+HG A+ + AM++H +LLVN ++L+++R F+GEIFFY L+ N+ + +SP  S
Subjt:  ILPIGRQQWILRPCFFDVLENDHGFADRVSAMDEHWNLLVNGIILQEKRAFVGEIFFYVLVWNAFESQSPNDS
A0A7J6GP45 Uncharacterized protein2.8e-0534.38Show/hide
Query:  RQQWILRPCFFDVLENDHGFADRVSAMDEHWNLLVNGIILQEKRAFVGEIFFYVLVWNAFESQSPNDSVSVRAWPSSMELHF---CHLQWRIFKFR
        +Q+   RP   DVL+N+     R+S ++++WNLLVN + LQ++  FV +I   VLV N F  QS +   +  A P   + H    C +  +  K R
Subjt:  RQQWILRPCFFDVLENDHGFADRVSAMDEHWNLLVNGIILQEKRAFVGEIFFYVLVWNAFESQSPNDSVSVRAWPSSMELHF---CHLQWRIFKFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTATTGCAGCATTTCCTCCTTCCGGCGCCGGAAAGTCGCCGCCACATGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTTC
AGTCCAAGCATACACCCGAGGGAACTCACCGGCGTCCAACAATTTCACTCCCGTCATTTGTTCAATCATTCCCAACCAATACGCAATCGCGCCGAACGCCAAATC
CGCCATTCCGATCTCATCTCCGCCGAAGAATTTCCTCTCTCCGCCGCCGAATCCCCATTCCTCGACGATTCTCAGCATTTCCAAGCTCTGATTCTTCGCATCCTC
CCGATCGGAAGGCAGCAATGGATTTTGCGGCCATGTTTCTTCGATGTACTCGAGAATGATCATGGATTCGCAGATAGGGTTTCCGCCATGGACGAGCACTGGAAT
CTTCTTGTGAACGGGATTATACTGCAAGAGAAGAGGGCTTTTGTTGGCGAGATCTTCTTCTATGTATTGGTATGGAATGCCTTTGAGAGCCAGAGCCCAAATGAC
TCTGTAAGCGTAAGGGCTTGGCCAAGTTCCATGGAGCTTCACTTCTGTCATCTTCAATGGAGGATTTTCAAGTTCAGAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTATTGCAGCATTTCCTCCTTCCGGCGCCGGAAAGTCGCCGCCACATGGTTCCAATCCGGCAGATTATCTCTGATCACCGGCGCTTCCCTGAATCTTTC
AGTCCAAGCATACACCCGAGGGAACTCACCGGCGTCCAACAATTTCACTCCCGTCATTTGTTCAATCATTCCCAACCAATACGCAATCGCGCCGAACGCCAAATC
CGCCATTCCGATCTCATCTCCGCCGAAGAATTTCCTCTCTCCGCCGCCGAATCCCCATTCCTCGACGATTCTCAGCATTTCCAAGCTCTGATTCTTCGCATCCTC
CCGATCGGAAGGCAGCAATGGATTTTGCGGCCATGTTTCTTCGATGTACTCGAGAATGATCATGGATTCGCAGATAGGGTTTCCGCCATGGACGAGCACTGGAAT
CTTCTTGTGAACGGGATTATACTGCAAGAGAAGAGGGCTTTTGTTGGCGAGATCTTCTTCTATGTATTGGTATGGAATGCCTTTGAGAGCCAGAGCCCAAATGAC
TCTGTAAGCGTAAGGGCTTGGCCAAGTTCCATGGAGCTTCACTTCTGTCATCTTCAATGGAGGATTTTCAAGTTCAGAAACTGAGGTGATCGTATGGAGTGGTCG
GTGAAGTTAGTCATCAATTGTGGTGGCCAGCGTTGGATGGTGGCGGTCTCTAGAAGTGATGGTCAGAGTATGCCTACAACAGTTGCTAGAGTTGATTGTTGGAAG
CGAAGGTGGTGGATGGAGGTTGACCAAGGATGGTAGTCGTAGTGGCCACTGCCAACAGTCGATGGTGGTCACCAAAATTGGCCAACAATGATGGTCGCTAGAGTA
TGTTATCGATGGTGGTCATTGAAAGTGACCCGACAGAGGGCAATGGTCGCCATTTAGTAGAAGTGAGAAATTAGGGGGAGACTAACCATTAAATACTCCAAACTC
ATTTTTCTAAAAGTTAGTTTCTAGTATTTATCCTAAGTTAATTTATTTATTCTAAATTTATTAAAGTTTTTTCAAAAGAATTTATGTTTTAAATTAAA
Protein sequenceShow/hide protein sequence
MCVLQHFLLPAPESRRHMVPIRQIISDHRRFPESFSPSIHPRELTGVQQFHSRHLFNHSQPIRNRAERQIRHSDLISAEEFPLSAAESPFLDDSQHFQALILRIL
PIGRQQWILRPCFFDVLENDHGFADRVSAMDEHWNLLVNGIILQEKRAFVGEIFFYVLVWNAFESQSPNDSVSVRAWPSSMELHFCHLQWRIFKFRN