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CaUC05G083230 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G083230
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMSH1
Genome locationCiama_Chr05:3803306..3806347
RNA-Seq ExpressionCaUC05G083230
SyntenyCaUC05G083230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN79853.1 hypothetical protein VITISV_017272 [Vitis vinifera]5.1e-1267.86Show/hide
Query:  RADSAGTINPHIPSKAAAQMDRSKLDFPPPFGPVKRNNDSISILFCTALPSTASNQ
        R      INPHIPS AAAQ+DR+KLD PPP GPVKRNND IS + CTALP   SNQ
Subjt:  RADSAGTINPHIPSKAAAQMDRSKLDFPPPFGPVKRNNDSISILFCTALPSTASNQ
TrEMBL top hitse value%identityAlignment
A0A0A9JDU0 MSH17.4e-0961.11Show/hide
Query:  EWGIRADSAGTINPHIPSKAAAQMDRSKLDFPPPFGPVKRNNDSISILFCTALP
        ++GI A++AGTINPHIPS AAAQ DRS LD PPPFGPV+ N + +   F  A P
Subjt:  EWGIRADSAGTINPHIPSKAAAQMDRSKLDFPPPFGPVKRNNDSISILFCTALP
A5CA48 Uncharacterized protein2.5e-1267.86Show/hide
Query:  RADSAGTINPHIPSKAAAQMDRSKLDFPPPFGPVKRNNDSISILFCTALPSTASNQ
        R      INPHIPS AAAQ+DR+KLD PPP GPVKRNND IS + CTALP   SNQ
Subjt:  RADSAGTINPHIPSKAAAQMDRSKLDFPPPFGPVKRNNDSISILFCTALPSTASNQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAATCGGCTGATTTCTTGCTCCCATCAAATCATCTGACCAATTTGTACATGGAAAACAAAAGACCGTCAAATTATGAACAAACAGTCACATTATCTGCTTCAGA
GATTCCTTCATTCTTCGCTGTTTCAAAGGCAAGGCTCTCTCTACATATTCCACTAATCAACTTCCAAGTGGGAACCGTTCGTCCATCAGCACAAATGGTTCCCATTGCTT
TGTACACAGTGCAAATTGAATATTCCATGCAAGTGAGTGGAGACAATACCAAGACAACCTACTTTATCAAGAGCTTCAACAATGCTCCCAGCAATACAAGTTCCTTTTGC
TGTCTCTGTTCCGCGACAGATTTCATCTATAAGTACAAGACTTCTTTCTGTTACTCGACTGATGATGGATCTCATCTCCGACATTTCCACCTGAGAGATAATCATGAAAC
AAAGGAATATTTAGAATGGGGAATCAGGGCGGACTCTGCTGGTACCATAAATCCACATATCCCAAGCAAAGCAGCAGCACAAATGGATCGAAGCAAACTAGATTTTCCAC
CCCCATTTGGACCAGTCAAAAGAAATAACGATTCCATCTCAATACTATTCTGCACAGCATTGCCTTCCACGGCATCAAACCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAATCGGCTGATTTCTTGCTCCCATCAAATCATCTGACCAATTTGTACATGGAAAACAAAAGACCGTCAAATTATGAACAAACAGTCACATTATCTGCTTCAGA
GATTCCTTCATTCTTCGCTGTTTCAAAGGCAAGGCTCTCTCTACATATTCCACTAATCAACTTCCAAGTGGGAACCGTTCGTCCATCAGCACAAATGGTTCCCATTGCTT
TGTACACAGTGCAAATTGAATATTCCATGCAAGTGAGTGGAGACAATACCAAGACAACCTACTTTATCAAGAGCTTCAACAATGCTCCCAGCAATACAAGTTCCTTTTGC
TGTCTCTGTTCCGCGACAGATTTCATCTATAAGTACAAGACTTCTTTCTGTTACTCGACTGATGATGGATCTCATCTCCGACATTTCCACCTGAGAGATAATCATGAAAC
AAAGGAATATTTAGAATGGGGAATCAGGGCGGACTCTGCTGGTACCATAAATCCACATATCCCAAGCAAAGCAGCAGCACAAATGGATCGAAGCAAACTAGATTTTCCAC
CCCCATTTGGACCAGTCAAAAGAAATAACGATTCCATCTCAATACTATTCTGCACAGCATTGCCTTCCACGGCATCAAACCAATAG
Protein sequenceShow/hide protein sequence
MRKSADFLLPSNHLTNLYMENKRPSNYEQTVTLSASEIPSFFAVSKARLSLHIPLINFQVGTVRPSAQMVPIALYTVQIEYSMQVSGDNTKTTYFIKSFNNAPSNTSSFC
CLCSATDFIYKYKTSFCYSTDDGSHLRHFHLRDNHETKEYLEWGIRADSAGTINPHIPSKAAAQMDRSKLDFPPPFGPVKRNNDSISILFCTALPSTASNQ