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CaUC05G084310 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G084310
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPhotosystem II CP47 reaction center protein
Genome locationCiama_Chr05:4689815..4690497
RNA-Seq ExpressionCaUC05G084310
SyntenyCaUC05G084310
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF38459.1 conserved hypothetical protein [Ricinus communis]1.0e-1147.92Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT---------------------------------VQGIGLLLDMFRSLCSSSSDTFGMVLE
        V++DVPF+R E +YSVEQV + IEFY GE  GVSY+                                 VQG+GLLLDM RSLCS  SDTFGMVLE
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT---------------------------------VQGIGLLLDMFRSLCSSSSDTFGMVLE

GFP86390.1 photosystem ii cp47 reaction center protein, partial [Phtheirospermum japonicum]3.3e-1046.88Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY------------------------TVQGIG---------LLLDMFRSLCSSSSDTFGMVLE
        +++ VPF+RAE +YSVEQV +T+EFYGGE  GVSY                        T++  G         LLLDM R LCSSSSDTFGMVLE
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY------------------------TVQGIG---------LLLDMFRSLCSSSSDTFGMVLE

KAG8500889.1 hypothetical protein CXB51_002905 [Gossypium anomalum]5.4e-1361.11Show/hide
Query:  RNCYVKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVS-----YTVQGIGLLLDMFRSLCSSSSDTFGMVLE
        R+  V +DVPF+RAE +YSVEQV +T+EFYGGE   VS     Y+++GIGLLL M    C SSSDTFGMVLE
Subjt:  RNCYVKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVS-----YTVQGIGLLLDMFRSLCSSSSDTFGMVLE

TKS13871.1 PsbB [Populus alba]1.1e-1047.92Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY----TVQ-----------------------------GIGLLLDMFRSLCSSSSDTFGMVLE
        V++DVPF+RAE +YSVEQV +T+EFYGGE  GVSY    TV+                              +GLLLDM R  CSSSSDTFGM LE
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY----TVQ-----------------------------GIGLLLDMFRSLCSSSSDTFGMVLE

YP_009679115.1 photosystem II CP47 chlorophyll apoprotein [Teucrium mascatense]1.0e-1147.87Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT---------------------------------VQGIGLLLDMFRSLCSSSSDTFGMV
        V++DVPF+RAE +YSVEQV +T+EFYGGE  GVSY+                                 V G+GLLL M R LCSSSSDTFGMV
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT---------------------------------VQGIGLLLDMFRSLCSSSSDTFGMV

TrEMBL top hitse value%identityAlignment
A0A288XS09 Photosystem II CP47 reaction center protein5.6e-0843.75Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY------------------------TVQGIGLL---------LDMFRSLCSSSSDTFGMVLE
        V++DVPF+RAE +YSVEQV +T+EFYGGE  GVSY                        T++  G+          LDM R L S SSD FGMVLE
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY------------------------TVQGIGLL---------LDMFRSLCSSSSDTFGMVLE

A0A443Q421 Photosystem II CP47 reaction center-like protein5.1e-0943.75Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY------------------------TVQGIGLL---------LDMFRSLCSSSSDTFGMVLE
        V++DVPF+RAE +YSVEQV +T+EFYGGE  GVSY                        T++  G+           DM R LCSS SDTFGM LE
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY------------------------TVQGIGLL---------LDMFRSLCSSSSDTFGMVLE

A0A4U5QTE8 PsbB (Chloroplast)5.4e-1147.92Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY----TVQ-----------------------------GIGLLLDMFRSLCSSSSDTFGMVLE
        V++DVPF+RAE +YSVEQV +T+EFYGGE  GVSY    TV+                              +GLLLDM R  CSSSSDTFGM LE
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSY----TVQ-----------------------------GIGLLLDMFRSLCSSSSDTFGMVLE

A0A4Y6I556 Photosystem II CP47 reaction center protein4.9e-1247.87Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT---------------------------------VQGIGLLLDMFRSLCSSSSDTFGMV
        V++DVPF+RAE +YSVEQV +T+EFYGGE  GVSY+                                 V G+GLLL M R LCSSSSDTFGMV
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT---------------------------------VQGIGLLLDMFRSLCSSSSDTFGMV

B9SD21 Uncharacterized protein4.9e-1247.92Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT---------------------------------VQGIGLLLDMFRSLCSSSSDTFGMVLE
        V++DVPF+R E +YSVEQV + IEFY GE  GVSY+                                 VQG+GLLLDM RSLCS  SDTFGMVLE
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT---------------------------------VQGIGLLLDMFRSLCSSSSDTFGMVLE

SwissProt top hitse value%identityAlignment
A9LYC6 Photosystem II CP47 reaction center protein3.2e-0869.44Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT
        V++DVPF+RAE +YSVEQV +T+EFYGGE  GVSY+
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT

B0Z4Y6 Photosystem II CP47 reaction center protein2.4e-0872.22Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT
        V++DVPF+RAE +YSVEQV +TIEFYGGE  GVSY+
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT

B0Z570 Photosystem II CP47 reaction center protein2.4e-0872.22Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT
        V++DVPF+RAE +YSVEQV +TIEFYGGE  GVSY+
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT

Q3V508 Photosystem II CP47 reaction center protein3.2e-0869.44Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT
        V++DVPF+RAE +YSVEQV +T+EFYGGE  GVSY+
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT

Q9MTJ7 Photosystem II CP47 reaction center protein2.4e-0872.22Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT
        V++DVPF+RAE +YSVEQV +TIEFYGGE  GVSY+
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT

Arabidopsis top hitse value%identityAlignment
ATCG00680.1 photosystem II reaction center protein B2.3e-0969.44Show/hide
Query:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT
        V++DVPF+RAE +YSVEQV +T+EFYGGE  GVSY+
Subjt:  VKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACGAGGACGGAATTGTTATGTTAAATCCGATGTTCCTTTTCAAAGAGCAGAATTGGAGTATAGTGTTGAACAAGTTGATATAACTATTGAGTTCTATGGT
GGTGAATTCGGTGGAGTTAGTTATACCGTTCAAGGAATTGGTTTACTTTTGGACATGTTTCGTTCGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTA
GAACAACAATTACCACAAAGTTATGTTCAATTTAGTGATATTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGACGAGGACGGAATTGTTATGTTAAATCCGATGTTCCTTTTCAAAGAGCAGAATTGGAGTATAGTGTTGAACAAGTTGATATAACTATTGAGTTCTATGGT
GGTGAATTCGGTGGAGTTAGTTATACCGTTCAAGGAATTGGTTTACTTTTGGACATGTTTCGTTCGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTA
GAACAACAATTACCACAAAGTTATGTTCAATTTAGTGATATTGATTAA
Protein sequenceShow/hide protein sequence
MRRGRNCYVKSDVPFQRAELEYSVEQVDITIEFYGGEFGGVSYTVQGIGLLLDMFRSLCSSSSDTFGMVLEQQLPQSYVQFSDID