; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC05G084880 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G084880
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationCiama_Chr05:5170211..5171182
RNA-Seq ExpressionCaUC05G084880
SyntenyCaUC05G084880
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134444.1 pre-rRNA-processing protein TSR2 isoform X2 [Cucumis sativus]1.8e-5192.98Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+S+LQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLVGSR
         LMMIYEENLVGSR
Subjt:  HLMMIYEENLVGSR

XP_008438673.1 PREDICTED: pre-rRNA-processing protein TSR2 isoform X1 [Cucumis melo]2.5e-5093.04Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVA
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA

Query:  EHLMMIYEENLVGSR
        E LMMIYEENLVGSR
Subjt:  EHLMMIYEENLVGSR

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]1.0e-5193.86Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLVGSR
         LMMIYEENLVGSR
Subjt:  HLMMIYEENLVGSR

XP_011650975.1 pre-rRNA-processing protein TSR2 isoform X1 [Cucumis sativus]4.3e-5092.17Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA
        ME IDGL STNYKAGS+S+LQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVA
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA

Query:  EHLMMIYEENLVGSR
        E LMMIYEENLVGSR
Subjt:  EHLMMIYEENLVGSR

XP_038881388.1 pre-rRNA-processing protein TSR2 homolog [Benincasa hispida]1.0e-5193.86Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        MESIDGL STNYKAGS+SSLQ AISSVFSRWDGLQMAIEN+WGGRDSHQKSLNLASDVF+WFSQSKPPLYVEDLE LLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLVGSR
         LMMIYEENLVGSR
Subjt:  HLMMIYEENLVGSR

TrEMBL top hitse value%identityAlignment
A0A0A0L7I9 Uncharacterized protein8.5e-5292.98Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+S+LQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLVGSR
         LMMIYEENLVGSR
Subjt:  HLMMIYEENLVGSR

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X25.0e-5293.86Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLVGSR
         LMMIYEENLVGSR
Subjt:  HLMMIYEENLVGSR

A0A1S3AX32 pre-rRNA-processing protein TSR2 isoform X11.2e-5093.04Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIE QVA
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIE-QVA

Query:  EHLMMIYEENLVGSR
        E LMMIYEENLVGSR
Subjt:  EHLMMIYEENLVGSR

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X25.0e-5293.86Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME IDGL STNYKAGS+SSLQMAISSVFSRWDGLQMAIEN+WGGRDSHQKSLNL SDVFSWFS SKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLVGSR
         LMMIYEENLVGSR
Subjt:  HLMMIYEENLVGSR

A0A6J1C959 pre-rRNA-processing protein TSR2 homolog3.0e-4989.47Show/hide
Query:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE
        ME  DGLASTNYKAGS+S LQ AISSVFSRWDGLQMAI+N+WGGRDSHQKSLNLASDVFSWFS+SKPPLYVEDLENLLHE+LLLSFNTEIEDGSIEQVAE
Subjt:  MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAE

Query:  HLMMIYEENLVGSR
         LMMIYEE+L GSR
Subjt:  HLMMIYEENLVGSR

SwissProt top hitse value%identityAlignment
Q06672 Pre-rRNA-processing protein TSR22.6e-0534.78Show/hide
Query:  QMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLS----FNTEIEDGSIEQVAEHLMMIYEE
        ++ +S V  +WD L +A+EN WGG DS +K   +   V   F   K    V D   L+ ETLL +    F T +ED S   +A  ++ IY +
Subjt:  QMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLS----FNTEIEDGSIEQVAEHLMMIYEE

Q3KRG3 Pre-rRNA-processing protein TSR2 homolog9.8e-0527.91Show/hide
Query:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEE
        A+ +V   W  LQ+A++N +GG  S QK+  +   +  +F+ +   L  +++E+ + E +   F+T ++DGS+ QVA+ +  ++++
Subjt:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEE

Q3T090 Pre-rRNA-processing protein TSR2 homolog1.4e-0631.52Show/hide
Query:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGSR
        A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F ++   L ++++E+ L E ++  F+T +EDGS+ QV++ L  ++     G R
Subjt:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGSR

Q8C8T8 Pre-rRNA-processing protein TSR2 homolog1.0e-0633.33Show/hide
Query:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY
        A+ +    W  LQ+A+EN +GG  S +K+  L   V  +F  +   L +E++E+ L E +   F+T +EDGS+ QV++ L  ++
Subjt:  AISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY

Q969E8 Pre-rRNA-processing protein TSR2 homolog5.2e-0632.53Show/hide
Query:  ISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY
        + +    W  LQ+A+EN +GG  S +K+  L   V  +F ++   L ++++E+ L E L   F+T +EDGS+ QV++ L  ++
Subjt:  ISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIY

Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region3.0e-2560.42Show/hide
Query:  SSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGS
        S LQ  I  + SRW GLQMA++N+WGG DS +KS  LA ++F   SQS   + VE++ENLLHE+LLLSFNTEIEDGSIE+VAE LM+++EE+L G+
Subjt:  SSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENLVGS

AT5G27990.1 Pre-rRNA-processing protein TSR2, conserved region6.5e-1241.76Show/hide
Query:  LQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL--LHETLLLSFNTEIEDGSIEQVAEHLMMIYEE
        L+  I  +  RW  ++ A+EN WGGRDS  K+    + VF +F QSK P  V+D+E L  L +  L   NT  EDGS+++VA  L+ +YE+
Subjt:  LQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENL--LHETLLLSFNTEIEDGSIEQVAEHLMMIYEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCAATTGATGGATTAGCCTCAACCAATTACAAGGCGGGATCTCTCTCCAGCCTCCAAATGGCCATTTCGTCCGTGTTTTCTCGGTGGGACGGCCTTCAAATGGC
CATTGAAAATCGATGGGGAGGTCGCGACTCTCATCAGAAATCTCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCTTTATACGTGGAAGATC
TGGAAAATTTGCTCCATGAAACCCTGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACACTTGATGATGATATACGAAGAAAATTTG
GTGGGAAGTCGTTAG
mRNA sequenceShow/hide mRNA sequence
CCCGAATGTCTCTCCGCCTCTCTCTCTAAACACATCTCCGCTTTTCTCTCCGCCCAATTCTGACATTAATTACTAAATCCAACCGCCATCTCTCTCTCTTTCTCTGATAA
CTAGTTAGGAGAGACAGAGAGAGAAGATTTCCAGGTTTCGGAAGAGGGAGAAGACGAAGACGAAGACGAAACTCTGAGGTTCATCCATGGAGTCAATTGATGGATTAGCC
TCAACCAATTACAAGGCGGGATCTCTCTCCAGCCTCCAAATGGCCATTTCGTCCGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGAAAATCGATGGGGAGGTCG
CGACTCTCATCAGAAATCTCTGAATCTCGCCTCTGATGTCTTCTCTTGGTTCTCTCAATCCAAACCTCCTTTATACGTGGAAGATCTGGAAAATTTGCTCCATGAAACCC
TGTTGCTCTCCTTCAACACCGAGATTGAAGATGGCAGCATCGAACAGGTAGCAGAACACTTGATGATGATATACGAAGAAAATTTGGTGGGAAGTCGTTAGAAAAATGTA
GAATGGGATTGTTCATATGAGAAATTAAAACCAGCACCGGATTTGTCATGGCTTGAAGGCAGATAGAATTGTAGTTGCTGCCATTGGCCTGAAGATAAATCTTATATGAA
TTATTACTATACAAATTCATTACTCAAAATCTGTAAATGGGTTTGGACTTGGATCCTCTCTTTTTTTTATTTTTATTTCTCAGACCAAAAAATTTCAATATTCTTATTTT
CTTTTGTC
Protein sequenceShow/hide protein sequence
MESIDGLASTNYKAGSLSSLQMAISSVFSRWDGLQMAIENRWGGRDSHQKSLNLASDVFSWFSQSKPPLYVEDLENLLHETLLLSFNTEIEDGSIEQVAEHLMMIYEENL
VGSR