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CaUC05G085980 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G085980
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTranscription termination factor MTEF1
Genome locationCiama_Chr05:6137530..6138100
RNA-Seq ExpressionCaUC05G085980
SyntenyCaUC05G085980
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022973791.1 transcription termination factor MTERF5, chloroplastic-like [Cucurbita maxima]2.3e-1271.19Show/hide
Query:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        EIVS  K  SLASN V  ++NE PVI+FFEN+GFSKSQI E+VKKFPQVLS  PEKT+L
Subjt:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

XP_022979833.1 uncharacterized protein LOC111479414 [Cucurbita maxima]3.3e-1168.97Show/hide
Query:  IVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        I S +K  S  SNSV+ +NNE PVI+FFEN+GFSK+QI E+VKKFPQVLSA PEKT+L
Subjt:  IVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

XP_023521670.1 transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subsp. pepo]5.6e-1166.1Show/hide
Query:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        EIVS  K  SLASN V  ++NE PVI+ F+N+GFSKSQI E++KKFPQVLS  PEKT+L
Subjt:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

XP_023521671.1 transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subsp. pepo]5.6e-1166.1Show/hide
Query:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        EIVS  K  SLASN V  ++NE PVI+ F+N+GFSKSQI E++KKFPQVLS  PEKT+L
Subjt:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

XP_023539068.1 transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subsp. pepo]7.3e-1164.41Show/hide
Query:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        EIVS  K  SLASN V  ++NE PVI+ F+N+GFSKSQI E++KKFPQV+S  PEKT+L
Subjt:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

TrEMBL top hitse value%identityAlignment
A0A6J1EYS7 transcription termination factor MTERF6, chloroplastic/mitochondrial-like isoform X37.9e-1167.8Show/hide
Query:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        EI S  K  S  SNSV+ +N+E PVI+ FEN+GFSK+QI EIVKKFPQVLSA PEKT+L
Subjt:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

A0A6J1EZH0 uncharacterized protein LOC111440613 isoform X21.0e-1066.1Show/hide
Query:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        EI S  K  S  SN V+ +N+E PVI+FFEN+GFSK+QI E+VKKFPQVLSA PEKT+L
Subjt:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

A0A6J1F4G8 uncharacterized protein LOC111440613 isoform X11.0e-1066.1Show/hide
Query:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        EI S  K  S  SN V+ +N+E PVI+FFEN+GFSK+QI E+VKKFPQVLSA PEKT+L
Subjt:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

A0A6J1I9L4 transcription termination factor MTERF5, chloroplastic-like1.1e-1271.19Show/hide
Query:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        EIVS  K  SLASN V  ++NE PVI+FFEN+GFSKSQI E+VKKFPQVLS  PEKT+L
Subjt:  EIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

A0A6J1IXF7 uncharacterized protein LOC1114794141.6e-1168.97Show/hide
Query:  IVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL
        I S +K  S  SNSV+ +NNE PVI+FFEN+GFSK+QI E+VKKFPQVLSA PEKT+L
Subjt:  IVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPEKTIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTATTTACCATTTCCCACGACCCACGTTTGCCGGCAGCCGCATGACCTCACCGACCCACTCCTTTTATTTGTTCTCTTATAGTCTGCCTCACCGCCGCTCGCCG
ACACTCCTCCGCCGCCAATTTCCTTTTTCGTTCTCTCATCCTCTCGAGATTGTATCATATGTGAAATTTGTTTCGTTGGCTTCTAACTCAGTTCAACTTAAGAAC
AATGAGAATCCTGTAATTATGTTCTTTGAGAATTACGGATTCTCTAAATCGCAGATCTTTGAGATTGTTAAGAAGTTCCCTCAAGTTCTTTCAGCAAAACCCGAG
AAAACCATTCTTCTGTACCAGCCTAGAGTGTTCTTGGTATCCGATTCAAGGAGATTGTAG
mRNA sequenceShow/hide mRNA sequence
GTTATTTACCATTTCCCACGACCCACGTTTGCCGGCAGCCGCATGACCTCACCGACCCACTCCTTTTATTTGTTCTCTTATAGTCTGCCTCACCGCCGCTCGCCG
ACACTCCTCCGCCGCCAATTTCCTTTTTCGTTCTCTCATCCTCTCGAGATTGTATCATATGTGAAATTTGTTTCGTTGGCTTCTAACTCAGTTCAACTTAAGAAC
AATGAGAATCCTGTAATTATGTTCTTTGAGAATTACGGATTCTCTAAATCGCAGATCTTTGAGATTGTTAAGAAGTTCCCTCAAGTTCTTTCAGCAAAACCCGAG
AAAACCATTCTTCTGTACCAGCCTAGAGTGTTCTTGGTATCCGATTCAAGGAGATTGTAG
Protein sequenceShow/hide protein sequence
VIYHFPRPTFAGSRMTSPTHSFYLFSYSLPHRRSPTLLRRQFPFSFSHPLEIVSYVKFVSLASNSVQLKNNENPVIMFFENYGFSKSQIFEIVKKFPQVLSAKPE
KTILLYQPRVFLVSDSRRL