; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC05G086130 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G086130
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationCiama_Chr05:6294979..6295812
RNA-Seq ExpressionCaUC05G086130
SyntenyCaUC05G086130
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0016462 - pyrophosphatase activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582092.1 hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sororia]4.9e-3648.83Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----
        ++FLGDVG+TDLN L+RIL HCT++QLM IEN SKGRDLT VT+KLWK FYE+KFG++  + V+E MKH KESFKWKQ+YE K+ ELE+KA  IE     
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----

Query:  ----EKAQKESHQIIFCG-GPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMET
            EKA+K+S Q+  C   PS                     SK+L K K   +I +V S N+NK+    GGT         S+I KK ++E LQ +ET
Subjt:  ----EKAQKESHQIIFCG-GPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMET

Query:  KNLIIFQKNLMQK
        KN I F++N +QK
Subjt:  KNLIIFQKNLMQK

KAG6582214.1 hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia]4.9e-3649.26Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIEEKAQK
        ++FLGDVG  DLN L+ IL HCT+DQLMHIEN SKGRDLT VT+KLWK FYEKKFGE+  + V+ERMKH KESF+WKQ+YE KM ELE+KA  IE++  +
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIEEKAQK

Query:  ESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMETKNLIIFQKNL
                      N+K R + +  +    +  SK+L K K + +I +V S  +NK+  S+GG          S+I KK ++E  Q +ETKNLI F++N 
Subjt:  ESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMETKNLIIFQKNL

Query:  MQK
        +QK
Subjt:  MQK

XP_022979571.1 uncharacterized protein LOC111479252 [Cucurbita maxima]2.6e-3747.89Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----
        ++FLGDVG TDLN L+ IL HCT+DQLMHIEN SKGRDLT +T+KLWK FYE+KFG+++ + V++RMKH KESF+WKQ+YE K+ ELE KA  +E     
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----

Query:  ----EKAQKESHQIIFCG-GPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMET
            EKA+K+S Q+  C   PS                     SK+L K K   ++ +V S N+NK+    GGT         S+I KK ++E LQ +ET
Subjt:  ----EKAQKESHQIIFCG-GPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMET

Query:  KNLIIFQKNLMQK
        KNLI F++N +QK
Subjt:  KNLIIFQKNLMQK

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]6.5e-5761.32Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKME-LEKKAKNIE-----
        ++FLGDVGDTDL++L+RIL HCT+DQLMHIENSSKGRDLT VTDKLWKNFYEKKFG+N+ D VI++MK+KKESFKWKQ+YEAKME LEKKA  IE     
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKME-LEKKAKNIE-----

Query:  ----EKAQKESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMETK
            E A+K+S +IIFC   S  N K+R      +  CNTT+SKIL K  RE Q+ +V S          GGT KP   TK S+I KK KREALQC+ETK
Subjt:  ----EKAQKESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMETK

Query:  NLIIFQKNLMQK
        N+I F++N MQK
Subjt:  NLIIFQKNLMQK

XP_038885879.1 uncharacterized protein LOC120076185 [Benincasa hispida]2.1e-5560.38Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKME-LEKKAKNIE-----
        ++FL DVGDTDL++L RIL HCT+DQL+HIENSSKGRDLTLVTDKLWKNFY KKFG+N++D  IERMK+KKESFKWKQ+YEAKME LEKKA  IE     
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKME-LEKKAKNIE-----

Query:  ----EKAQKESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMETK
            E A+K+S +IIFC   S  N K+       +  CNTT+SKIL K  RE Q+ +V S          GGT KP   TK S+I KK KREALQC+ETK
Subjt:  ----EKAQKESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMETK

Query:  NLIIFQKNLMQK
        N+I F++N MQK
Subjt:  NLIIFQKNLMQK

TrEMBL top hitse value%identityAlignment
A0A0A0KJR8 Nudix hydrolase domain-containing protein1.4e-3353.53Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----
        +KFLGDVGDTDL  L+ ILSHCT DQL+HIEN SKGRDLT +T+KLWKNFYE+KFG+++ D V+     K E+FKW  +Y AKM ELE +AK IE     
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----

Query:  ----EKAQKESHQIIFCGG-PSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQS
            EKA+K+S QI+FCG   S ++ K     +   F  NTTKS  L K+KRE+ + +V ST+ NK+  S
Subjt:  ----EKAQKESHQIIFCGG-PSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQS

A0A1S4E1U0 transcription elongation factor B polypeptide 3 isoform X26.0e-3251.63Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEK---------KA
        ++FLGDVG+TD++LL+RIL HCT+DQLMH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K+ +F+W Q+YEAKM ++EK         K 
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEK---------KA

Query:  KNIEEKAQKESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREV
          ++E A+K+S QI  C    P + KR F G    +    TK+KIL K+K EV
Subjt:  KNIEEKAQKESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREV

A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X26.0e-3251.63Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEK---------KA
        ++FLGDVG+TD++LL+RIL HCT+DQLMH+E SS+GRDLT VTDKLWK FYE++FG+ +   VIERM+ K+ +F+W Q+YEAKM ++EK         K 
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEK---------KA

Query:  KNIEEKAQKESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREV
          ++E A+K+S QI  C    P + KR F G    +    TK+KIL K+K EV
Subjt:  KNIEEKAQKESHQIIFCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREV

A0A6J1IR58 uncharacterized protein LOC1114792521.3e-3747.89Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----
        ++FLGDVG TDLN L+ IL HCT+DQLMHIEN SKGRDLT +T+KLWK FYE+KFG+++ + V++RMKH KESF+WKQ+YE K+ ELE KA  +E     
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----

Query:  ----EKAQKESHQIIFCG-GPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMET
            EKA+K+S Q+  C   PS                     SK+L K K   ++ +V S N+NK+    GGT         S+I KK ++E LQ +ET
Subjt:  ----EKAQKESHQIIFCG-GPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMET

Query:  KNLIIFQKNLMQK
        KNLI F++N +QK
Subjt:  KNLIIFQKNLMQK

A0A6J1ITM2 uncharacterized protein LOC1114792431.2e-3548.36Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----
        ++FLGDVG TDLN L+ IL HCT++QLM IENSSKGRDLT VT+KLWK FYE+KFG++  + V+E MKH KESFKWKQ+YE K+ ELE+KA  IE     
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKM-ELEKKAKNIE-----

Query:  ----EKAQKESHQIIFCG-GPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMET
            EKA+K+S Q+  C   PS                     SK+L KSK   +  +V S + N K+   GGT         S+I KK ++E LQ +ET
Subjt:  ----EKAQKESHQIIFCG-GPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMET

Query:  KNLIIFQKNLMQK
        KN+I F++N +QK
Subjt:  KNLIIFQKNLMQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).5.4e-1731.19Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAK-MELEKKAKNI-----
        +K++G VG  D  LL++IL HCT++QL HIE+++   DL+ +TDK WK FY+K +GE +   +IE ++ +K   FKW+ +YE K + +++K K +     
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAK-MELEKKAKNI-----

Query:  ----EEKAQKESHQIIFCGGPSPINKKRRFKG-KPNEFGCNTTKSKILNKSK----REVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREAL
            +E  +K+S Q   C    P   KR F G   + +     KS I+ K+K    +  ++  + +   N  ++SF  +I   + T +S       R   
Subjt:  ----EEKAQKESHQIIFCGGPSPINKKRRFKG-KPNEFGCNTTKSKILNKSK----REVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREAL

Query:  QCMETKNLIIFQKNLMQK
             +NL   +KN +QK
Subjt:  QCMETKNLIIFQKNLMQK

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).3.7e-1836.18Show/hide
Query:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAK-MELEKKAKNI-----
        +K++G VG  D  LL++IL HCT++QL HIE+++   DL+ +TDK WK FY+K +GE +   +IE ++ +K   FKW+ +YE K + +++K K +     
Subjt:  MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMK-HKKESFKWKQVYEAK-MELEKKAKNI-----

Query:  ----EEKAQKESHQIIFCGGPSPINKKRRFKG-KPNEFGCNTTKSKILNKSK
            +E  +K+S Q   C    P   KR F G   + +     KS I+ K+K
Subjt:  ----EEKAQKESHQIIFCGGPSPINKKRRFKG-KPNEFGCNTTKSKILNKSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTTCTTGGAGATGTCGGCGATACCGATTTAAATCTTCTAGACCGTATTTTGTCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCTAAA
GGAAGGGATCTCACACTCGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGTGAGAACAATTATGATTTTGTGATTGAGAGGATGAAACATAAG
AAAGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGGAGTTAGAAAAGAAGGCAAAGAATATTGAGGAAAAAGCTCAAAAAGAAAGTCATCAAATAATA
TTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACGAAGATTTAAAGGAAAACCAAATGAGTTTGGATGCAATACCACCAAGAGCAAGATTTTGAATAAGTCGAAG
AGAGAAGTACAAATTTATGAAGTTCCATCTACGAACGATAATAAGAAGAAACAAAGCTTTGGAGGAACAATCAAACCTAGACAAAATACTAAGATAAGCGAGATA
TGGAAGAAGGAAAAGAGAGAAGCGTTGCAGTGTATGGAGACGAAGAACCTAATAATTTTTCAAAAAAATTTGATGCAAAAGCAGTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATTTCTTGGAGATGTCGGCGATACCGATTTAAATCTTCTAGACCGTATTTTGTCACATTGTACTATTGACCAATTGATGCATATAGAGAACTCTTCTAAA
GGAAGGGATCTCACACTCGTGACTGACAAGTTGTGGAAAAACTTCTACGAAAAAAAGTTTGGTGAGAACAATTATGATTTTGTGATTGAGAGGATGAAACATAAG
AAAGAATCATTTAAATGGAAGCAAGTGTATGAGGCAAAGATGGAGTTAGAAAAGAAGGCAAAGAATATTGAGGAAAAAGCTCAAAAAGAAAGTCATCAAATAATA
TTTTGTGGGGGTCCTTCTCCAATCAACAAGAAACGAAGATTTAAAGGAAAACCAAATGAGTTTGGATGCAATACCACCAAGAGCAAGATTTTGAATAAGTCGAAG
AGAGAAGTACAAATTTATGAAGTTCCATCTACGAACGATAATAAGAAGAAACAAAGCTTTGGAGGAACAATCAAACCTAGACAAAATACTAAGATAAGCGAGATA
TGGAAGAAGGAAAAGAGAGAAGCGTTGCAGTGTATGGAGACGAAGAACCTAATAATTTTTCAAAAAAATTTGATGCAAAAGCAGTGTTAG
Protein sequenceShow/hide protein sequence
MKFLGDVGDTDLNLLDRILSHCTIDQLMHIENSSKGRDLTLVTDKLWKNFYEKKFGENNYDFVIERMKHKKESFKWKQVYEAKMELEKKAKNIEEKAQKESHQII
FCGGPSPINKKRRFKGKPNEFGCNTTKSKILNKSKREVQIYEVPSTNDNKKKQSFGGTIKPRQNTKISEIWKKEKREALQCMETKNLIIFQKNLMQKQC