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CaUC05G087680 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G087680
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionLINE-1 reverse transcriptase like
Genome locationCiama_Chr05:8013199..8014260
RNA-Seq ExpressionCaUC05G087680
SyntenyCaUC05G087680
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH79402.1 LINE-1 reverse transcriptase like [Trifolium medium]8.1e-0459.09Show/hide
Query:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQA
        ASVE+L  L  I++ FE ASGLKVN  KSC+ G+NV DD M+ A
Subjt:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQA

TYK02928.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.1e-0438.1Show/hide
Query:  IEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLQDL
        IEKAF+D+F +IY    +  W+I NL+W +I N     L  PFT++E+  A++ +   K   L
Subjt:  IEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLQDL

TrEMBL top hitse value%identityAlignment
A0A2Z6PCJ8 Reverse transcriptase domain-containing protein6.7e-0454.35Show/hide
Query:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQAED
        A+VE+L  L  I++ FE ASGLKVN  KSC+ G+NV+DD +  A D
Subjt:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQAED

A0A392LWR3 LINE-1 reverse transcriptase like3.9e-0459.09Show/hide
Query:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQA
        ASVE+L  L  I++ FE ASGLKVN  KSC+ G+NV DD M+ A
Subjt:  ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQA

A0A5D3BVB5 LINE-1 retrotransposable element ORF2 protein3.9e-0438.1Show/hide
Query:  IEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLQDL
        IEKAF+D+F +IY    +  W+I NL+W +I N     L  PFT++E+  A++ +   K   L
Subjt:  IEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLQDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAA
CGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCAAGACCTGACGGCTAGTGTCGAACATC
TCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAGGTTAATCTTCATAAATCTTGTATAGCTGGGGTCAATGTTGACGATGATCTTATGCAA
CAAGCAGAAGACATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAA
CGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCAAGACCTGACGGCTAGTGTCGAACATC
TCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAGGTTAATCTTCATAAATCTTGTATAGCTGGGGTCAATGTTGACGATGATCTTATGCAA
CAAGCAGAAGACATATAG
Protein sequenceShow/hide protein sequence
MDQDIEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLQDLTASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQ
QAEDI