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CaUC05G088090 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G088090
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionMADS-box transcription factor 17-like
Genome locationCiama_Chr05:8506915..8516115
RNA-Seq ExpressionCaUC05G088090
SyntenyCaUC05G088090
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002487 - Transcription factor, K-box


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439145.1 PREDICTED: MADS-box transcription factor 17-like [Cucumis melo]2.7e-5574.01Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------
        MNKILERYHQ+CY+SGS+TNLDESDIQIEEVSKLRAKYESLQRS+RNFLGEELEPL+LKELHNLEKQLDKTLS AR RKAEIMLQKLADL KM       
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------

Query:  ---------LEEEQQCMQEKEGGEEDHPMNYEVVGA-DPNM-NTTRYFDPQEEEEEG---RAMIEAGNNDLIPDWLL
                  +++QQC+QE+EGGEED P NYEVV A DPNM NTTRYF+ QEEEEE    R MI+ G+N LIPDWLL
Subjt:  ---------LEEEQQCMQEKEGGEEDHPMNYEVVGA-DPNM-NTTRYFDPQEEEEEG---RAMIEAGNNDLIPDWLL

XP_011651126.1 agamous-like MADS-box protein MADS3 [Cucumis sativus]6.1e-5576.19Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------
        MNKILERYHQ+CY+SGS+TNLDESD+QIEEVSKLRAKYESLQRSHRNFLGEELEPL LKELHNLEKQLDKTLS AR RKAEIMLQKLADLRKM       
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------

Query:  ---LEEEQQCMQEKEGGEEDHPMNYEVVGA-DPNM-NTTRYFDPQEEEEEGRAMIEAGNNDLIPDWLL
           L+ + +  QE+EGGEED P NYEVV A DPNM NTTRY++ QEEEEE R +I+ G+N LIPDWLL
Subjt:  ---LEEEQQCMQEKEGGEEDHPMNYEVVGA-DPNM-NTTRYFDPQEEEEEGRAMIEAGNNDLIPDWLL

XP_022141193.1 MADS-box transcription factor 6-like [Momordica charantia]2.3e-4671.07Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------
        MNKILERYHQRCYSSGS++NLDESD+QIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLS AR RKAEIMLQ+LA+LRKM       
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------

Query:  -------LEEEQQCMQEKEGGE---EDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAM
               LEE Q+ +Q+ E G+   E+   NYEVVG +PNM ++R FD QEEEE   AM
Subjt:  -------LEEEQQCMQEKEGGE---EDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAM

XP_022922550.1 MADS-box transcription factor 6-like [Cucurbita moschata]4.6e-3458.97Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQC
        MNKILERYH RCY++GS+TNL  + +QIEEVSKLRAKYESLQRSHRN +GEELE L++KELH LEKQLDKTLS  RHRK EIMLQK+AD RKM       
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQC

Query:  MQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAGNNDLIPDWLL
          E+E G+ +  +  +V G +      +  + QEEEEEG AM+    + LIPD +L
Subjt:  MQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAGNNDLIPDWLL

XP_038886448.1 agamous-like MADS-box protein MADS3 [Benincasa hispida]2.6e-6683.53Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------
        MNKILERYHQRCYSSGSSTNLDESDIQIEEV+KLRAKYESL+RS+RNFLGEELEPLNLKELHNLEKQLDKTLSH R RKAEIMLQKLADLRKM       
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------

Query:  -------LEEEQQCMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAGNNDLIPDWLL
               LEEEQQCMQEKE GEED PMNY++VGADPNMN  RYFDPQ  EEEGR MIEAGNNDLIPDWLL
Subjt:  -------LEEEQQCMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAGNNDLIPDWLL

TrEMBL top hitse value%identityAlignment
A0A1S3AY43 MADS-box transcription factor 17-like1.3e-5574.01Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------
        MNKILERYHQ+CY+SGS+TNLDESDIQIEEVSKLRAKYESLQRS+RNFLGEELEPL+LKELHNLEKQLDKTLS AR RKAEIMLQKLADL KM       
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------

Query:  ---------LEEEQQCMQEKEGGEEDHPMNYEVVGA-DPNM-NTTRYFDPQEEEEEG---RAMIEAGNNDLIPDWLL
                  +++QQC+QE+EGGEED P NYEVV A DPNM NTTRYF+ QEEEEE    R MI+ G+N LIPDWLL
Subjt:  ---------LEEEQQCMQEKEGGEEDHPMNYEVVGA-DPNM-NTTRYFDPQEEEEEG---RAMIEAGNNDLIPDWLL

A0A5D3DF02 MADS-box transcription factor 17-like1.9e-3091.14Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRK
        MNKILERYHQ+CY+SGS+TNLDESDIQIEEVSKLRAKYESLQRS+RNFLGEELEPL+LKELHNLEKQLDKTLS AR RK
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRK

A0A6J1CJS1 MADS-box transcription factor 6-like1.1e-4671.07Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------
        MNKILERYHQRCYSSGS++NLDESD+QIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLS AR RKAEIMLQ+LA+LRKM       
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKM-------

Query:  -------LEEEQQCMQEKEGGE---EDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAM
               LEE Q+ +Q+ E G+   E+   NYEVVG +PNM ++R FD QEEEE   AM
Subjt:  -------LEEEQQCMQEKEGGE---EDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAM

A0A6J1E935 MADS-box transcription factor 6-like2.2e-3458.97Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQC
        MNKILERYH RCY++GS+TNL  + +QIEEVSKLRAKYESLQRSHRN +GEELE L++KELH LEKQLDKTLS  RHRK EIMLQK+AD RKM       
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQC

Query:  MQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAGNNDLIPDWLL
          E+E G+ +  +  +V G +      +  + QEEEEEG AM+    + LIPD +L
Subjt:  MQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAGNNDLIPDWLL

A0A6P9EZQ4 agamous-like MADS-box protein MADS3 isoform X49.6e-2260.19Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQC
        MNKILERY Q CYS  +      +     E+++LRAKYESLQRS R+ LGE+LEPLNLKEL NLEKQLDKTLS AR RK +IML +L +LR+ +EE+ Q 
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQC

Query:  MQE
        + E
Subjt:  MQE

SwissProt top hitse value%identityAlignment
P29386 Agamous-like MADS-box protein AGL63.5e-1346.67Show/hide
Query:  LERYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRK
        +ERY+ RCY+   S N  E   Q   +EV+KL++KYESL R++RN LGE+L  + +KEL  LE+QL+  L+  R RK ++M++++ DLRK
Subjt:  LERYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRK

Q6E6S7 Agamous-like MADS-box protein AP19.3e-1440.71Show/hide
Query:  MNKILERYHQRCYSSGSSTNLD-ESDIQIE-EVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLE--E
        M KIL+RY +  Y+    T  D ES      E SKL+AK E LQRS R+FLGE+L+ L+LKEL NLE+QLD  L H R RK ++M + +++L++  +  +
Subjt:  MNKILERYHQRCYSSGSSTNLD-ESDIQIE-EVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLE--E

Query:  EQQCMQEKEGGEEDHPMNYEVVGADPN--MNTTRYFDPQE
        EQ  M  KE  E++  +  +      N  +NT+ +  PQ+
Subjt:  EQQCMQEKEGGEEDHPMNYEVVGADPN--MNTTRYFDPQE

Q6EU39 MADS-box transcription factor 61.7e-1536.73Show/hide
Query:  MNKILERYHQRCYSSGSSTN-LDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQ
        + K LERY   CY++  S N L E+     E+SKL+AK+E+LQR+ R+ LGE+L PL++KEL  LEKQL+  LS AR RK ++M++++ +LR+       
Subjt:  MNKILERYHQRCYSSGSSTN-LDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQ

Query:  CMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAG
          +E++ GE +  + +++   +   +T+ Y   Q+      A++E G
Subjt:  CMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAG

Q7XUN2 MADS-box transcription factor 179.3e-1443.97Show/hide
Query:  MNKILERYHQRCYSS-GSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLR---KML
        +NK LE+Y+  CY++ GS++ L   + Q   +E+S+L+ K E LQRS R+ LGE+L PL++KEL  LEKQL+ +LS AR RK +IM++++ DLR   + L
Subjt:  MNKILERYHQRCYSS-GSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLR---KML

Query:  EEEQQCMQEKEGGEED
         E  + ++ K   E D
Subjt:  EEEQQCMQEKEGGEED

Q8LLR1 Agamous-like MADS-box protein MADS36.9e-1751.11Show/hide
Query:  KILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRK
        K LERY + CY+   +    E+    +EVSKL+AKYESLQR+ R+ LGE+L PL++KEL NLEKQL+  L+ AR RK ++M++++ DLR+
Subjt:  KILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRK

Arabidopsis top hitse value%identityAlignment
AT1G26310.1 K-box region and MADS-box transcription factor family protein1.8e-1239.81Show/hide
Query:  MNKILERYHQRCYSS----GSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEE
        M K+LERY +  Y+        ++++       E S+L+AK E L+R+ R++LGEELEP++LK+L NLE+QL+  L H R RK ++M + L  L++  +E
Subjt:  MNKILERYHQRCYSS----GSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEE

Query:  EQQ
         Q+
Subjt:  EQQ

AT2G45650.1 AGAMOUS-like 62.5e-1446.67Show/hide
Query:  LERYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRK
        +ERY+ RCY+   S N  E   Q   +EV+KL++KYESL R++RN LGE+L  + +KEL  LE+QL+  L+  R RK ++M++++ DLRK
Subjt:  LERYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRK

AT3G02310.1 K-box region and MADS-box transcription factor family protein2.3e-1245.16Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLR
        M K LERY +  Y S    N    +++    E  KL+ +YE+LQR  RN LGE+L PLN KEL  LE+QLD +L   R  K + ML +L+DL+
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLR

AT3G61120.1 AGAMOUS-like 135.2e-1235.14Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQC
        + + +ERY++   +   +  L+++    +EV+KL+ KYESL R+HRN +GE+LE +++KEL  LE+QL+  LS  R +K ++M++++ +LR+   E    
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQC

Query:  MQEKEGGEEDH
          + +   EDH
Subjt:  MQEKEGGEEDH

AT5G15800.1 K-box region and MADS-box transcription factor family protein1.2e-1141.28Show/hide
Query:  MNKILERYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLR---KMLE
        M K L+RY +  Y S    N    +++    E  KL+ +YE+LQR  RN LGE+L PLN KEL  LE+QLD +L   R  K + ML +L+DL+   +ML 
Subjt:  MNKILERYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLR---KMLE

Query:  EEQQCMQEK
        E  + +  K
Subjt:  EEQQCMQEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGA
GCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAA
ACTCTCTCACACGCTAGACACCGGAAGGCTGAGATAATGCTTCAAAAATTAGCAGACTTACGCAAAATGCTGGAAGAAGAACAACAATGTATGCAAGAAAAGGAA
GGTGGCGAAGAAGATCATCCAATGAATTACGAAGTTGTGGGAGCTGACCCAAACATGAACACCACGAGGTACTTTGATCCCCAAGAAGAAGAAGAAGAGGGCAGG
GCCATGATAGAAGCTGGGAATAATGACTTAATCCCAGATTGGCTACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGA
GCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAA
ACTCTCTCACACGCTAGACACCGGAAGGCTGAGATAATGCTTCAAAAATTAGCAGACTTACGCAAAATGCTGGAAGAAGAACAACAATGTATGCAAGAAAAGGAA
GGTGGCGAAGAAGATCATCCAATGAATTACGAAGTTGTGGGAGCTGACCCAAACATGAACACCACGAGGTACTTTGATCCCCAAGAAGAAGAAGAAGAGGGCAGG
GCCATGATAGAAGCTGGGAATAATGACTTAATCCCAGATTGGCTACTTTGA
Protein sequenceShow/hide protein sequence
MNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARHRKAEIMLQKLADLRKMLEEEQQCMQEKE
GGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAGNNDLIPDWLL