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CaUC05G091070 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G091070
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionhomeobox protein HAT3.1 isoform X2
Genome locationCiama_Chr05:11922431..11925087
RNA-Seq ExpressionCaUC05G091070
SyntenyCaUC05G091070
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN57486.1 hypothetical protein Csa_010932 [Cucumis sativus]1.9e-1587.5Show/hide
Query:  AQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRT
        A+NETRN+I SGGSGRQTVRVKA QNAQS NGGPDLEDSETKPLYSLFPLR Q RT
Subjt:  AQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRT
XP_022149327.1 homeobox protein HAT3.1 isoform X2 [Momordica charantia]2.1e-0978.72Show/hide
Query:  MSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRT
        M GGSGRQTVRVKAG+NA + NGGPDLEDSETKPLYSLF LR +  T
Subjt:  MSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRT
TrEMBL top hitse value%identityAlignment
A0A0A0LBT3 Uncharacterized protein9.3e-1687.5Show/hide
Query:  AQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRT
        A+NETRN+I SGGSGRQTVRVKA QNAQS NGGPDLEDSETKPLYSLFPLR Q RT
Subjt:  AQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRT
A0A6J1D7M5 homeobox protein HAT3.1 isoform X21.0e-0978.72Show/hide
Query:  MSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRT
        M GGSGRQTVRVKAG+NA + NGGPDLEDSETKPLYSLF LR +  T
Subjt:  MSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGGGAGCAAGCAGTGTAGAAGCTGTTACAATGGAATGGGGGTTCGGCCCAAGAAGAGAAAGGTTGGGCCGAGAAAGAAGGAAGTAGAAAATGGGGTAAAATATGG
AGATGTAGCCCAGAATGAGACACGCAATATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACAACGGTGGCCCAG
ATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAAACAAGGAAGAACCAACAACAACAACGACGACAACCACCACCACCACCACCATTCACCA
TCGCCTTTTCTTCCTAAAACTCCATTAACAAACATCTCCACCTCCTACAAGATCCATAAANTTTTTTTCTTTTCTTTTCTATTACCTTCTTCTGTTTCTGCTAGATTCTC
TTTGTTTCTCTTGAATTCCCGCGGAAAGGGAAATGGAGTTTTCGAAGCTATTACATTGCCTTGTTCTTCTCTTCAAATGCTTACCTCCTTAATTGCATTTCTTTCTTCTC
TTTCCTTTTTCCTACTTTACCCTTTTCTTCGCTTAACTTTCGGAGATAGAGGCTGCCTGATAGTCAAGACCGATGAATGTCTGTGGAGAAGTTCGGTGAGGGGAGTGCTT
GAGGCGGTTCACATACGAACTGACCTTTTAATCTCCAGAAGTGATGAGCATTCTACATTGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGGGAGCAAGCAGTGTAGAAGCTGTTACAATGGAATGGGGGTTCGGCCCAAGAAGAGAAAGGTTGGGCCGAGAAAGAAGGAAGTAGAAAATGGGGTAAAATATGG
AGATGTAGCCCAGAATGAGACACGCAATATGATTATGAGCGGCGGTAGCGGAAGGCAGACGGTGCGCGTGAAGGCTGGGCAAAATGCACAGAGTAACAACGGTGGCCCAG
ATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCCCGCTGAGAAAACAAGGAAGAACCAACAACAACAACGACGACAACCACCACCACCACCACCATTCACCA
TCGCCTTTTCTTCCTAAAACTCCATTAACAAACATCTCCACCTCCTACAAGATCCATAAANTTTTTTTCTTTTCTTTTCTATTACCTTCTTCTGTTTCTGCTAGATTCTC
TTTGTTTCTCTTGAATTCCCGCGGAAAGGGAAATGGAGTTTTCGAAGCTATTACATTGCCTTGTTCTTCTCTTCAAATGCTTACCTCCTTAATTGCATTTCTTTCTTCTC
TTTCCTTTTTCCTACTTTACCCTTTTCTTCGCTTAACTTTCGGAGATAGAGGCTGCCTGATAGTCAAGACCGATGAATGTCTGTGGAGAAGTTCGGTGAGGGGAGTGCTT
GAGGCGGTTCACATACGAACTGACCTTTTAATCTCCAGAAGTGATGAGCATTCTACATTGTCTTAG
Protein sequenceShow/hide protein sequence
MWGSKQCRSCYNGMGVRPKKRKVGPRKKEVENGVKYGDVAQNETRNMIMSGGSGRQTVRVKAGQNAQSNNGGPDLEDSETKPLYSLFPLRKQGRTNNNNDDNHHHHHHSP
SPFLPKTPLTNISTSYKIHKXFFFSFLLPSSVSARFSLFLLNSRGKGNGVFEAITLPCSSLQMLTSLIAFLSSLSFFLLYPFLRLTFGDRGCLIVKTDECLWRSSVRGVL
EAVHIRTDLLISRSDEHSTLS