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CaUC05G092010 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G092010
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrotransposon protein
Genome locationCiama_Chr05:14332150..14338288
RNA-Seq ExpressionCaUC05G092010
SyntenyCaUC05G092010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038877407.1 uncharacterized protein LOC120069696 [Benincasa hispida]1.5e-3949.78Show/hide
Query:  AELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML----------------------------------
        A+L+E LLYLV+IGWRS  G F       L +    K P  ALN+NTIE KVRSLKKQYNA+SEML                                  
Subjt:  AELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML----------------------------------

Query:  -----------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEKYELEFKRQKE
                               ES LNQD +DEEP EQS GR + P ESSR SKRKR SFQ EMIDIMR  +EM +THMGRLAS QK+KYELEF RQKE
Subjt:  -----------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEKYELEFKRQKE

Query:  VVNTIYNIDGLNEDDQLRLFDVGSVEI
        VVN IYNIDGL+ED Q+ L D+   +I
Subjt:  VVNTIYNIDGLNEDDQLRLFDVGSVEI

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]8.0e-5456.9Show/hide
Query:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML-------------------------------
        +EDA LVEALLYLVE GWRS+NGTFRPGYLQHLEQILHEKVP CALNKNTIE KVRSLKKQYNAVSEML                               
Subjt:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML-------------------------------

Query:  ---------------------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEK
                                         ESPLNQD +DEEP EQS GRA+ P ESSR SKRKR SFQ EMIDI++  +EMQ+THMGRLAS Q EK
Subjt:  ---------------------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEK

Query:  YELEFKRQKEVVNTIYNIDGLNEDDQLRLFDV
        YELE    KEVVN IYNID L E+DQ+ L D+
Subjt:  YELEFKRQKEVVNTIYNIDGLNEDDQLRLFDV

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.2e-3350Show/hide
Query:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML-------------------------------
        +EDA+LVEALLYLVE GWR +NGTFRPGYLQHLEQILHEKVP CALN NTIE KVRSLKKQYNAVSEML                               
Subjt:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML-------------------------------

Query:  --------------------------------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAI
                                                    ESPLNQD +DEEP EQS GRA+ PAESSR +KR R SFQ EMIDIMR  +
Subjt:  --------------------------------------------ESPLNQDGMDEEPVEQSIGRAT-PAESSRCSKRKRPSFQSEMIDIMRLAI

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]2.4e-3450.25Show/hide
Query:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML-------------------------ESPLNQ
        +EDA+ VEALLYLV+ GWRS+NGTFR  YLQHLE+I HEKV  CALN+NTIE KVRSLKKQ NAVSEML                          S  N 
Subjt:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML-------------------------ESPLNQ

Query:  DGMDEEPVEQSIGRAT-------PAESSRCSKRKRPSFQSEMIDIMRLAIE----MQNTHMGRLASCQKEKYELEFKRQKEVVNTIYNIDGLNEDDQLRL
         GM  +P       +T         +SS        +   E  D +RL  +     ++THMGRLAS QKEKYELEF R+KEVVN IYNIDGL+EDDQ+ L
Subjt:  DGMDEEPVEQSIGRAT-------PAESSRCSKRKRPSFQSEMIDIMRLAIE----MQNTHMGRLASCQKEKYELEFKRQKEVVNTIYNIDGLNEDDQLRL

Query:  FDV
         D+
Subjt:  FDV

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]6.5e-5657.33Show/hide
Query:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML-------------------------------
        +ED +LVEALLYLVE GWRS+NGTFR GYLQ+LE+ILHEKVP CALN+NTIE KVRSLKKQYNAVSEML                               
Subjt:  MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEML-------------------------------

Query:  ---------------------------------ESPLNQDGMDEEPVEQSIGRATP-AESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEK
                                         ESPLNQD +DEEP EQS GRA+  AESSR SKRKRPSFQ+EMIDIMR  +EMQ+THMGRLAS QKEK
Subjt:  ---------------------------------ESPLNQDGMDEEPVEQSIGRATP-AESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEK

Query:  YELEFKRQKEVVNTIYNIDGLNEDDQLRLFDV
        YELEF R+KEVVN IY+IDGL+EDDQ+   D+
Subjt:  YELEFKRQKEVVNTIYNIDGLNEDDQLRLFDV

TrEMBL top hitse value%identityAlignment
A0A2P5D960 Myb/SANT-like domain containing protein3.1e-1152.11Show/hide
Query:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IEYKVRSLKKQYNAVSEML
        +ED++LVE LL +   G W++NNGTF+ GYLQ LE++L+EK+PRC L     I+ +++ LKKQ++A+SEML
Subjt:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IEYKVRSLKKQYNAVSEML

A0A2P5FL77 Myb/SANT-like domain containing protein3.1e-1152.11Show/hide
Query:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IEYKVRSLKKQYNAVSEML
        +ED++LVE LL +   G W++NNGTF+ GYLQ LE++L+EK+PRC L     I+ +++ LKKQ++A+SEML
Subjt:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IEYKVRSLKKQYNAVSEML

A0A5D3CQS4 Retrotransposon protein9.0e-1150Show/hide
Query:  EDAELVEALLYLVEI-GWRSNNGTFRPGYLQHLEQILHEKVPRCALNKN-TIEYKVRSLKKQYNAVSEMLESPLNQDGMDEE
        E+A+LVE L+ LV   GWRSNNGTFRPGYL  L++++ EK+P   +  + TI+Y+V+SLKK Y A++EM     +  G +EE
Subjt:  EDAELVEALLYLVEI-GWRSNNGTFRPGYLQHLEQILHEKVPRCALNKN-TIEYKVRSLKKQYNAVSEMLESPLNQDGMDEE

A0A7J6HRN9 Myb_DNA-bind_3 domain-containing protein1.2e-1051.95Show/hide
Query:  EDAELVEALLYLVEIG-WRSNNG-TFRPGYLQHLEQILHEKVPRCALNKNT-IEYKVRSLKKQYNAVSEMLESPLNQ
        ED++LVE LL L+  G W+SNNG TF+ GYLQ LE++LHEK+PRC L  +  I+ +++ LKKQ +A+S+ML    N+
Subjt:  EDAELVEALLYLVEIG-WRSNNG-TFRPGYLQHLEQILHEKVPRCALNKNT-IEYKVRSLKKQYNAVSEMLESPLNQ

A0A803NQW5 Uncharacterized protein1.8e-1154.17Show/hide
Query:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCAL-NKNTIEYKVRSLKKQYNAVSEMLE
        +ED++LVE LL LV  G W+++NGTF+PGYLQ LE+ ++EKVP C L  +  IE +++ LKKQ+NA+S+ML+
Subjt:  MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCAL-NKNTIEYKVRSLKKQYNAVSEMLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACGTTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCT
GCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTACAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGAATCACCATTAA
ATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAGAGGCCATCATTCCAATCTGAAATG
ATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCAGAAGGAAGTAGT
AAACACCATATACAACATTGACGGCTTGAATGAGGATGACCAGCTAAGGTTATTTGACGTTGGGAGTGTTGAGATTACTCCACCTCAACTAAGGTTGTTTTCGACGTTGA
GTAGTGTTGAGCTTCGCTCCATCTCAACTAAGGAAAGTTGGCGCCGCGACGCTAACCGACATCAAAATGTAGCGCTACATCGGTATGAGATGGCACCGCTGCGCTGTGCA
TCATCAATTCCTACCTCCAGCGTCGTGTCGCAATGCCGTACCAGTGCTGCTGCGCTTCTTGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACGTTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCT
GCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTACAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGAATCACCATTAA
ATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAGAGGCCATCATTCCAATCTGAAATG
ATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCAGAAGGAAGTAGT
AAACACCATATACAACATTGACGGCTTGAATGAGGATGACCAGCTAAGGTTATTTGACGTTGGGAGTGTTGAGATTACTCCACCTCAACTAAGGTTGTTTTCGACGTTGA
GTAGTGTTGAGCTTCGCTCCATCTCAACTAAGGAAAGTTGGCGCCGCGACGCTAACCGACATCAAAATGTAGCGCTACATCGGTATGAGATGGCACCGCTGCGCTGTGCA
TCATCAATTCCTACCTCCAGCGTCGTGTCGCAATGCCGTACCAGTGCTGCTGCGCTTCTTGTATAG
Protein sequenceShow/hide protein sequence
MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIEYKVRSLKKQYNAVSEMLESPLNQDGMDEEPVEQSIGRATPAESSRCSKRKRPSFQSEM
IDIMRLAIEMQNTHMGRLASCQKEKYELEFKRQKEVVNTIYNIDGLNEDDQLRLFDVGSVEITPPQLRLFSTLSSVELRSISTKESWRRDANRHQNVALHRYEMAPLRCA
SSIPTSSVVSQCRTSAAALLV