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CaUC05G092190 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G092190
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCiama_Chr05:15059471..15059977
RNA-Seq ExpressionCaUC05G092190
SyntenyCaUC05G092190
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-5468.99Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT
        MEK+DV  PI+TILDGTNYITWAHQM+SFLIGRKLWRI+ GDITKP+K                   +  +   ED  +IERLEDWDSKN+QIITWLGNT
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT

Query:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        SIPAIHTQFDAFD+AKE+WD   TRFQSIGLAHYYQLH+ LVSLNQ++GQSVNE+ AT
Subjt:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.0e-5567.28Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTI----FIERLEDWDSKNNQIITW
        MEK+ V  PI+TILDGTNYITWAHQM+SFLIGRKLWRI+ GDITKP+K T     T  + ++  D +    +V E T+    +IERLEDWDSKN+QIITW
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTI----FIERLEDWDSKNNQIITW

Query:  LGNTSIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        LGNTSIPAIHTQFD FD+AKE+W+   TRFQSIGLAHYYQLH+ LV+LNQ+VGQSVNE+  T
Subjt:  LGNTSIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

KAA0053979.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.7e-5570.44Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDV-DQDLVEEDTIFIERLEDWDSKNNQIITWLGN
        MEKSD+  PI+T LDG+NYITWAHQM+SFLIGRKLW I+ GDITKP+K  P    T  +  +   ND+ D D   ED  +IERLEDWD KN+QIITWLGN
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDV-DQDLVEEDTIFIERLEDWDSKNNQIITWLGN

Query:  TSIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        TSIP IHTQFDAFDTAKE+WD   TRFQSIGLAHYYQLH+ LVSLNQ+VGQSVNE+ AT
Subjt:  TSIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]5.0e-5569.62Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT
        MEK+DV  PI+TILDGTNYITWAHQM+SFLIGRKLWRI+ GDITKP+K                   +  +   ED  +IERLEDWDSKN+QIITWLGNT
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT

Query:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        SIPAIHTQFDAFD+AKE+WD   TRFQSIGLAHYYQLH+ LVSLNQ+VGQSVNE+ AT
Subjt:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]3.7e-5872.78Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT
        MEK +V  PI+TILDGTNYITWAHQM+SFLIGRKLWRI+ GDITKP+K TP  D T++  +   D  V +   E D  +IERLEDWDSKN+QIITWLGNT
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT

Query:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        SIPAIHTQFDAFDTAKE+WD  +TRFQSIGLAHYYQLH+ LVSLNQ+ GQSVNE+ AT
Subjt:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882002.4e-5569.62Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT
        MEK+DV  PI+TILDGTNYITWAHQM+SFLIGRKLWRI+ GDITKP+K                   +  +   ED  +IERLEDWDSKN+QIITWLGNT
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT

Query:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        SIPAIHTQFDAFD+AKE+WD   TRFQSIGLAHYYQLH+ LVSLNQ+VGQSVNE+ AT
Subjt:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-5568.99Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT
        MEK+DV  PI+TILDGTNYITWAHQM+SFLIGRKLWRI+ GDITKP+K                   +  +   ED  +IERLEDWDSKN+QIITWLGNT
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT

Query:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        SIPAIHTQFDAFD+AKE+WD   TRFQSIGLAHYYQLH+ LVSLNQ++GQSVNE+ AT
Subjt:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

A0A5A7TXR0 Putative mitochondrial protein2.4e-5567.28Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTI----FIERLEDWDSKNNQIITW
        MEK+ V  PI+TILDGTNYITWAHQM+SFLIGRKLWRI+ GDITKP+K T     T  + ++  D +    +V E T+    +IERLEDWDSKN+QIITW
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTI----FIERLEDWDSKNNQIITW

Query:  LGNTSIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        LGNTSIPAIHTQFD FD+AKE+W+   TRFQSIGLAHYYQLH+ LV+LNQ+VGQSVNE+  T
Subjt:  LGNTSIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

A0A5A7UKE6 Integrase, catalytic core8.4e-5670.44Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDV-DQDLVEEDTIFIERLEDWDSKNNQIITWLGN
        MEKSD+  PI+T LDG+NYITWAHQM+SFLIGRKLW I+ GDITKP+K  P    T  +  +   ND+ D D   ED  +IERLEDWD KN+QIITWLGN
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDV-DQDLVEEDTIFIERLEDWDSKNNQIITWLGN

Query:  TSIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        TSIP IHTQFDAFDTAKE+WD   TRFQSIGLAHYYQLH+ LVSLNQ+VGQSVNE+ AT
Subjt:  TSIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-5568.99Show/hide
Query:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT
        MEK+DV  PI+TILDGTNYITWAHQM+SFLIGRKLWRI+ GDITKP+K                   +  +   ED  +IERLEDWDSKN+QIITWLGNT
Subjt:  MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNT

Query:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT
        SIPAIHTQFDAFD+AKE+WD   TRFQSIGLAHYYQLH+ LVSLNQ++GQSVNE+ AT
Subjt:  SIPAIHTQFDAFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFAT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAGTGATGTTTTGTGCCCCATTACCACTATACTTGATGGTACAAATTATATCACATGGGCTCATCAAATGAAGAGTTTTTTGATTGGTCGAAAACTGTGGCG
AATCATCATGGGAGATATCACCAAACCTATCAAGAACACACCTAAAAAGGATGGCACTGATAGTGATAAATCAAAACAGGTAGATAATGATGTTGATCAAGATCTTGTGG
AGGAAGATACTATATTTATAGAACGACTAGAGGATTGGGATAGCAAAAATAATCAAATAATAACTTGGTTGGGTAACACCTCTATTCCTGCCATACATACTCAATTTGAC
GCATTTGACACTGCTAAAGAAGTTTGGGATTTGTTTACTACACGTTTTCAATCTATTGGTCTTGCTCATTACTATCAATTACATGCCAACCTTGTTAGTCTTAATCAGAA
AGTTGGGCAGTCTGTGAATGAATTTTTCGCTACGCAAGCCTATCTGGACACAATTGGACCAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAGTGATGTTTTGTGCCCCATTACCACTATACTTGATGGTACAAATTATATCACATGGGCTCATCAAATGAAGAGTTTTTTGATTGGTCGAAAACTGTGGCG
AATCATCATGGGAGATATCACCAAACCTATCAAGAACACACCTAAAAAGGATGGCACTGATAGTGATAAATCAAAACAGGTAGATAATGATGTTGATCAAGATCTTGTGG
AGGAAGATACTATATTTATAGAACGACTAGAGGATTGGGATAGCAAAAATAATCAAATAATAACTTGGTTGGGTAACACCTCTATTCCTGCCATACATACTCAATTTGAC
GCATTTGACACTGCTAAAGAAGTTTGGGATTTGTTTACTACACGTTTTCAATCTATTGGTCTTGCTCATTACTATCAATTACATGCCAACCTTGTTAGTCTTAATCAGAA
AGTTGGGCAGTCTGTGAATGAATTTTTCGCTACGCAAGCCTATCTGGACACAATTGGACCAAGCTAA
Protein sequenceShow/hide protein sequence
MEKSDVLCPITTILDGTNYITWAHQMKSFLIGRKLWRIIMGDITKPIKNTPKKDGTDSDKSKQVDNDVDQDLVEEDTIFIERLEDWDSKNNQIITWLGNTSIPAIHTQFD
AFDTAKEVWDLFTTRFQSIGLAHYYQLHANLVSLNQKVGQSVNEFFATQAYLDTIGPS