; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC05G096460 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G096460
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptiontranscription factor HY5
Genome locationCiama_Chr05:27687962..27690771
RNA-Seq ExpressionCaUC05G096460
SyntenyCaUC05G096460
Gene Ontology termsGO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010099 - regulation of photomorphogenesis (biological process)
GO:0010114 - response to red light (biological process)
GO:0010218 - response to far red light (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR004827 - Basic-leucine zipper domain
IPR044280 - Transcriptional activator Hac1/HY5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK31424.1 transcription factor HY5 [Cucumis melo var. makuwa]1.9e-5190.65Show/hide
Query:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA
        AAAAA  R+RSSSERSSSSAFQLDVKEDIGAESDEEEISR PQICGNS S VGISA GKAPASDS+RSRGRSAAEKES+RLKRLLRNRVSAQQARERKK 
Subjt:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA

Query:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIW
        YLSELE RATNLEKRNSELEEKLSTLQNENQMLRHV I+
Subjt:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIW

XP_004136344.1 transcription factor HY5 [Cucumis sativus]2.6e-5687.18Show/hide
Query:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA
        A+AA   R+RSSSERSSSSAFQLDVKEDIGAESDEEEISR PQICGNS S VGISA GKAPASDS+RSRGRSAAEKES+RLKRLLRNRVSAQQARERKK 
Subjt:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA

Query:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTAK
        YLSELE RATNLEK+NSELEEKLSTLQNENQMLRH    ILKNTTTNKR DGD AK
Subjt:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTAK

XP_008466392.1 PREDICTED: transcription factor HY5 [Cucumis melo]1.2e-5687.26Show/hide
Query:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA
        AAAAA  R+RSSSERSSSSAFQLDVKEDIGAESDEEEISR PQICGNS S VGISA GKAPASDS+RSRGRSAAEKES+RLKRLLRNRVSAQQARERKK 
Subjt:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA

Query:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTAKC
        YLSELE RATNLEKRNSELEEKLSTLQNENQMLRH    ILKNTTTNK+ D D  KC
Subjt:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTAKC

XP_022940419.1 transcription factor HY5-like isoform X1 [Cucurbita moschata]2.5e-5182.39Show/hide
Query:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV-GISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARE
        ER  AAA+AGR RSSSERSSSSAF LDVKEDIG  SDEEEISR PQICGNS SA  G SASGKAPASD +RSRGRS+A+KES+RLKRLLRNRVSAQQARE
Subjt:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV-GISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARE

Query:  RKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTA
        RKKAYL +LE RA NL KRNSELEE LSTLQNENQMLRH    ILKNTTTNKR DGDTA
Subjt:  RKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTA

XP_023524405.1 transcription factor HY5-like isoform X1 [Cucurbita pepo subsp. pepo]9.5e-5181.76Show/hide
Query:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV-GISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARE
        ER AA A+AGR RSSSERSSSSAF LDVKEDIG  SDEEE SR PQICGNS SA  G SASGKAPASD +RSRGRS+A+KES+RLKRLLRNRVSAQQARE
Subjt:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV-GISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARE

Query:  RKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTA
        RKKAYL +LE RA NL KRNSELEE LSTLQNENQMLRH    ILKNTTTNKR DGDTA
Subjt:  RKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTA

TrEMBL top hitse value%identityAlignment
A0A0A0LJB7 BZIP domain-containing protein1.3e-5687.18Show/hide
Query:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA
        A+AA   R+RSSSERSSSSAFQLDVKEDIGAESDEEEISR PQICGNS S VGISA GKAPASDS+RSRGRSAAEKES+RLKRLLRNRVSAQQARERKK 
Subjt:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA

Query:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTAK
        YLSELE RATNLEK+NSELEEKLSTLQNENQMLRH    ILKNTTTNKR DGD AK
Subjt:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTAK

A0A1S3CSG2 transcription factor HY55.6e-5787.26Show/hide
Query:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA
        AAAAA  R+RSSSERSSSSAFQLDVKEDIGAESDEEEISR PQICGNS S VGISA GKAPASDS+RSRGRSAAEKES+RLKRLLRNRVSAQQARERKK 
Subjt:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA

Query:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTAKC
        YLSELE RATNLEKRNSELEEKLSTLQNENQMLRH    ILKNTTTNK+ D D  KC
Subjt:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTAKC

A0A5D3E623 Transcription factor HY59.3e-5290.65Show/hide
Query:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA
        AAAAA  R+RSSSERSSSSAFQLDVKEDIGAESDEEEISR PQICGNS S VGISA GKAPASDS+RSRGRSAAEKES+RLKRLLRNRVSAQQARERKK 
Subjt:  AAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKA

Query:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIW
        YLSELE RATNLEKRNSELEEKLSTLQNENQMLRHV I+
Subjt:  YLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIW

A0A6J1FK24 transcription factor HY5-like isoform X11.2e-5182.39Show/hide
Query:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV-GISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARE
        ER  AAA+AGR RSSSERSSSSAF LDVKEDIG  SDEEEISR PQICGNS SA  G SASGKAPASD +RSRGRS+A+KES+RLKRLLRNRVSAQQARE
Subjt:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV-GISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARE

Query:  RKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTA
        RKKAYL +LE RA NL KRNSELEE LSTLQNENQMLRH    ILKNTTTNKR DGDTA
Subjt:  RKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTA

A0A6J1IYV9 transcription factor HY5-like isoform X11.8e-5081.13Show/hide
Query:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV-GISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARE
        ER  A A+A R RSSSERSSSSAF LDVKEDIG  SDEEEISR PQICGNS SA  G SASGKAPASD +RSRGRS+A+KES+RLKRLLRNRVSAQQARE
Subjt:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV-GISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARE

Query:  RKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTA
        RKKAYL +LE RA NL KRNSELEE LSTLQNENQMLRH    ILKNTTTNKR DGDTA
Subjt:  RKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTA

SwissProt top hitse value%identityAlignment
A2VD01 Cyclic AMP-responsive element-binding protein 3-like protein 24.1e-0433.33Show/hide
Query:  AAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNEN----QMLRHVQIWILKNTTTNKRGDG-DTAKC
        A EK  ++++R ++N++SAQ++R +KK Y+  LE R  N    NSEL +K+  L++ N    Q L+ +Q  +    T + +  G  T  C
Subjt:  AAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNEN----QMLRHVQIWILKNTTTNKRGDG-DTAKC

O24646 Transcription factor HY56.0e-3261.68Show/hide
Query:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGK------------APASDSIRSRGRSAAEKESRRLKRLL
        E+A ++ AA  L SSSERSSSSA  L++KE  G ESD EEI R P+  G    AVG   SG+            A   +S R RGR+ AEKE++RLKRLL
Subjt:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGK------------APASDSIRSRGRSAAEKESRRLKRLL

Query:  RNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDG
        RNRVSAQQARERKKAYLSELE+R  +LE +NSELEE+LSTLQNENQMLRH    ILKNTT NKRG G
Subjt:  RNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDG

Q8TFU8 Transcriptional activator hacA3.1e-0441.79Show/hide
Query:  RSRGRSAAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQML
        R R ++  EKE RR++R+LRNR +AQ +RERK+  + +LES   ++E++N  L ++L+ ++ EN  L
Subjt:  RSRGRSAAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQML

Q8W191 Transcription factor HY5-like2.2e-1344.59Show/hide
Query:  RSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASG----------KAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKK
        R +   SSSS+ +    E    ESDEE +         S   +  SA            +   S + R RGR+  +KE R LKRLLRNRVSAQQARERKK
Subjt:  RSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASG----------KAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKK

Query:  AYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN
         Y+S+LESRA  L+  N +LEEK+STL NEN MLR + I     T  N
Subjt:  AYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN

Q9SM50 Transcription factor HY52.4e-2859.35Show/hide
Query:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV------GISASGKA-PASDSIRSRGRSAAEKESRRLKRLLRNRVS
        E+A ++ AA  L SSSERSSSSA   ++KE  G ESD +EI R P++ G +          G+SA+G+A P++ + R RGRS A+KE++RLKRLLRNRVS
Subjt:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAV------GISASGKA-PASDSIRSRGRSAAEKESRRLKRLLRNRVS

Query:  AQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTT
        AQQARERKKAYL +LE+R   LE +N+ELEE+LSTLQNENQMLRH    ILKNTT
Subjt:  AQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTT

Arabidopsis top hitse value%identityAlignment
AT3G17609.1 HY5-homolog3.7e-1661.18Show/hide
Query:  SDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN
        S + R RGR+  +KE R LKRLLRNRVSAQQARERKK Y+S+LESRA  L+  N +LEEK+STL NEN MLR + I     T  N
Subjt:  SDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN

AT3G17609.2 HY5-homolog1.5e-1444.59Show/hide
Query:  RSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASG----------KAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKK
        R +   SSSS+ +    E    ESDEE +         S   +  SA            +   S + R RGR+  +KE R LKRLLRNRVSAQQARERKK
Subjt:  RSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASG----------KAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKK

Query:  AYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN
         Y+S+LESRA  L+  N +LEEK+STL NEN MLR + I     T  N
Subjt:  AYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN

AT3G17609.3 HY5-homolog3.7e-1661.18Show/hide
Query:  SDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN
        S + R RGR+  +KE R LKRLLRNRVSAQQARERKK Y+S+LESRA  L+  N +LEEK+STL NEN MLR + I     T  N
Subjt:  SDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN

AT3G17609.4 HY5-homolog3.7e-1661.18Show/hide
Query:  SDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN
        S + R RGR+  +KE R LKRLLRNRVSAQQARERKK Y+S+LESRA  L+  N +LEEK+STL NEN MLR + I     T  N
Subjt:  SDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTN

AT5G11260.1 Basic-leucine zipper (bZIP) transcription factor family protein4.3e-3361.68Show/hide
Query:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGK------------APASDSIRSRGRSAAEKESRRLKRLL
        E+A ++ AA  L SSSERSSSSA  L++KE  G ESD EEI R P+  G    AVG   SG+            A   +S R RGR+ AEKE++RLKRLL
Subjt:  ERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGK------------APASDSIRSRGRSAAEKESRRLKRLL

Query:  RNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDG
        RNRVSAQQARERKKAYLSELE+R  +LE +NSELEE+LSTLQNENQMLRH    ILKNTT NKRG G
Subjt:  RNRVSAQQARERKKAYLSELESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACGGAACGAGCCGCCGCCGCCGCCGCCGCCGGTCGTCTGCGCTCGAGTAGCGAAAGATCGTCGAGCTCGGCTTTTCAACTTGATGTTAAAGAAGATATAGGAGC
GGAGAGTGATGAGGAGGAGATAAGCAGAGAACCGCAGATCTGTGGCAACTCCGTCTCTGCCGTTGGCATCTCAGCATCTGGTAAAGCGCCTGCATCAGATAGCATAAGGA
GCAGAGGACGAAGCGCCGCTGAGAAAGAAAGCAGAAGGCTGAAGAGATTGTTAAGAAACAGAGTTTCGGCACAGCAAGCAAGGGAAAGGAAAAAGGCGTATTTAAGCGAA
TTGGAAAGCAGAGCAACAAACTTGGAGAAAAGGAACTCGGAGCTTGAAGAGAAGTTGTCCACGTTACAGAATGAGAACCAGATGCTTAGACACGTTCAAATCTGGATACT
AAAGAACACAACAACCAACAAGAGAGGTGACGGCGACACTGCAAAATGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGACGGAACGAGCCGCCGCCGCCGCCGCCGCCGGTCGTCTGCGCTCGAGTAGCGAAAGATCGTCGAGCTCGGCTTTTCAACTTGATGTTAAAGAAGATATAGGAGC
GGAGAGTGATGAGGAGGAGATAAGCAGAGAACCGCAGATCTGTGGCAACTCCGTCTCTGCCGTTGGCATCTCAGCATCTGGTAAAGCGCCTGCATCAGATAGCATAAGGA
GCAGAGGACGAAGCGCCGCTGAGAAAGAAAGCAGAAGGCTGAAGAGATTGTTAAGAAACAGAGTTTCGGCACAGCAAGCAAGGGAAAGGAAAAAGGCGTATTTAAGCGAA
TTGGAAAGCAGAGCAACAAACTTGGAGAAAAGGAACTCGGAGCTTGAAGAGAAGTTGTCCACGTTACAGAATGAGAACCAGATGCTTAGACACGTTCAAATCTGGATACT
AAAGAACACAACAACCAACAAGAGAGGTGACGGCGACACTGCAAAATGCTAA
Protein sequenceShow/hide protein sequence
MSTERAAAAAAAGRLRSSSERSSSSAFQLDVKEDIGAESDEEEISREPQICGNSVSAVGISASGKAPASDSIRSRGRSAAEKESRRLKRLLRNRVSAQQARERKKAYLSE
LESRATNLEKRNSELEEKLSTLQNENQMLRHVQIWILKNTTTNKRGDGDTAKC