CuGenDBv2

Gene ID	CaUC05G097980
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Mitochondrial
Genome location	Ciama_Chr05:29204437..29207682
RNA-Seq Expression	CaUC05G097980
Synteny	CaUC05G097980
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.3e-54

87.4

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTP+QTIRNMILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIKLWLSFCHSFQEHVSRAS
        ELNQP PSIK+ L     F E    +S
Subjt:  ELNQPFPSIKLWLSFCHSFQEHVSRAS

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

1.0e-52

96.36

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIK
        ELNQP PSIK
Subjt:  ELNQPFPSIK

XP_022974807.1 uncharacterized protein LOC111473560 isoform X2 [Cucurbita maxima]

1.0e-52

96.36

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIK
        ELNQP PSIK
Subjt:  ELNQPFPSIK

XP_022974808.1 uncharacterized protein LOC111473560 isoform X3 [Cucurbita maxima]

9.1e-54

95.61

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIKLWLS
        ELNQP PSIKL LS
Subjt:  ELNQPFPSIKLWLS

XP_023536065.1 uncharacterized protein LOC111797318 [Cucurbita pepo subsp. pepo]

5.9e-53

96.36

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        +EFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRN ILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIK
        ELNQP PSIK
Subjt:  ELNQPFPSIK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FNY6 uncharacterized protein LOC111445972

4.1e-52

95.45

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIR MILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIK
        ELN P PSIK
Subjt:  ELNQPFPSIK

A0A6J1IB98 uncharacterized protein LOC111473560 isoform X2

4.9e-53

96.36

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIK
        ELNQP PSIK
Subjt:  ELNQPFPSIK

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

4.9e-53

96.36

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIK
        ELNQP PSIK
Subjt:  ELNQPFPSIK

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

4.4e-54

95.61

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIKLWLS
        ELNQP PSIKL LS
Subjt:  ELNQPFPSIKLWLS

A0A6J1IZE5 uncharacterized protein LOC111481279

7.0e-52

95.45

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIR  ILEKG+LLETEQMFREAGETWPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIK
        ELN P PSIK
Subjt:  ELNQPFPSIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

4.4e-46

79.09

Show/hide

Query:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE
        IEFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+ PPQI VTFVNGVEE FDA +T AQ+IR MIL+KG+ LETEQMFREAGE WPVIIPDE
Subjt:  IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDE

Query:  ELNQPFPSIK
        EL Q  P +K
Subjt:  ELNQPFPSIK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATCGAATTCAATGCCCTCGATCCACGCTTAGCGTCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGAAAGGCCAAGGAATCGAATCCCGCTTGCCAATTGATCGTCAA
GCGCCGAACCGACGACCATCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTTGATGCTACCTCTACTCCTGCTCAAACAATCAGGAATATGATTC
TTGAAAAGGGCAAACTCCTTGAGACCGAACAAATGTTCCGAGAAGCTGGGGAAACTTGGCCAGTTATCATTCCCGACGAGGAGCTCAATCAGCCATTTCCCAGTATCAAG
CTGTGGCTCAGCTTCTGTCATAGTTTTCAAGAGCATGTTTCAAGAGCTTCTGTCATGGCTCAGCACATAGGCAAAAGAGCGCTGTTAGTTAACCTTCTTTCTAGCAATTC
GGTTTCATTACATTCTTACCATTTAATTCCGCTTGCCTCTTGTTGCAGCCTAGAAAAGCAGAAGACAAGCAGTAACGTTGTCGCAAATCAATTCCCGTGGAGTAGAGCAC
TTTCTGAGATGTTTTTCGTTCTGAATTTTATAGGAATGTTTCCTAGTCTTGTCTTCTTAGATGTAAAAGATTTCGGCATC

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGKLLETEQMFREAGETWPVIIPDEELNQPFPSIK
LWLSFCHSFQEHVSRASVMAQHIGKRALLVNLLSSNSVSLHSYHLIPLASCCSLEKQKTSSNVVANQFPWSRALSEMFFVLNFIGMFPSLVFLDVKDFGI

CaUC05G097980 (gene) of Watermelon (USVL246-FR2) v1 genome