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CaUC05G100140 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC05G100140
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description40S ribosomal protein S29
Genome locationCiama_Chr05:31047359..31047899
RNA-Seq ExpressionCaUC05G100140
SyntenyCaUC05G100140
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB80035.1 40S ribosomal protein S29 [Morus notabilis]3.8e-1294.44Show/hide
Query:  MFDRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        +F RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MFDRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

GFZ12247.1 ribosomal protein S14p/S29e family protein [Actinidia rufa]3.4e-1363.64Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYNEMNFQSITIERIVSCNSQPIRLGSCMILG
        RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK    E  F   T   I+ C      LG+C+ +G
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYNEMNFQSITIERIVSCNSQPIRLGSCMILG

KAG6749024.1 hypothetical protein POTOM_046066 [Populus tomentosa]2.9e-1294.44Show/hide
Query:  FDRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKS
        F RVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIKS
Subjt:  FDRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKS

KAG7022492.1 40S ribosomal protein S29 [Cucurbita argyrosperma subsp. argyrosperma]4.9e-1289.47Show/hide
Query:  MFDRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSI
        +  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK I
Subjt:  MFDRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSI

RXH87454.1 hypothetical protein DVH24_034354 [Malus domestica]2.9e-1294.59Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYN
        RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+I N
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYN

TrEMBL top hitse value%identityAlignment
A0A2C9U073 Uncharacterized protein1.4e-1278.26Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYNEMNFQSITI
        RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK    EM  +S ++
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYNEMNFQSITI

A0A498IZC1 Uncharacterized protein1.4e-1294.59Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYN
        RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK+I N
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYN

A0A654FCI0 Uncharacterized protein4.0e-1257.35Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYNEMNFQSITIERIVS----CNSQPIRLGSCMI
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKS   + N   I+  + +      N+ PI++  C I
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYNEMNFQSITIERIVS----CNSQPIRLGSCMI

A0A7J0GN64 Ribosomal protein S14p/S29e family protein1.6e-1363.64Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYNEMNFQSITIERIVSCNSQPIRLGSCMILG
        RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK    E  F   T   I+ C      LG+C+ +G
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYNEMNFQSITIERIVSCNSQPIRLGSCMILG

W9RIN5 40S ribosomal protein S291.8e-1294.44Show/hide
Query:  MFDRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        +F RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
Subjt:  MFDRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

SwissProt top hitse value%identityAlignment
P62273 40S ribosomal protein S291.2e-0878.79Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

P62274 40S ribosomal protein S291.2e-0878.79Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

P62276 40S ribosomal protein S291.2e-0878.79Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVC N HGLIRKYGL  CRQCFR  AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S293.0e-1290.91Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q680P8 40S ribosomal protein S292.3e-1293.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein1.6e-1393.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT3G44010.1 Ribosomal protein S14p/S29e family protein1.6e-1393.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT4G33865.1 Ribosomal protein S14p/S29e family protein1.6e-1393.94Show/hide
Query:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGACCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTCCGTAGTAATGCCAAAGAAATTGGCTTCATCAAGTC
TATTTATAATGAAATGAATTTCCAATCCATTACGATCGAAAGAATTGTCAGTTGCAATTCTCAACCAATCAGACTTGGGAGTTGTATGATTTTGGGTCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGACCGAGTCTGCGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTCCGTAGTAATGCCAAAGAAATTGGCTTCATCAAGTC
TATTTATAATGAAATGAATTTCCAATCCATTACGATCGAAAGAATTGTCAGTTGCAATTCTCAACCAATCAGACTTGGGAGTTGTATGATTTTGGGTCAGTGA
Protein sequenceShow/hide protein sequence
MFDRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKSIYNEMNFQSITIERIVSCNSQPIRLGSCMILGQ