CuGenDBv2

Gene ID	CaUC06G112770
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Genome location	Ciama_Chr06:7517017..7519693
RNA-Seq Expression	CaUC06G112770
Synteny	CaUC06G112770
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022138383.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia]

1.7e-92

86.83

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Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        MAAF+QAKICP T S+LDR  R ENG KLRSRSQVVLP QEVCRR L+CNGMSLV FL FNN S P LA+AEETPNDK+EEDNGV+G IKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GKVLPKAYLKSARE+VKTLRES+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTV QEESYA LEKAIRSLA FYAKAGPSAPLPEAVKSD+LNDLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAEEF
        KAEEF
Subjt:  KAEEF

XP_022958810.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata]

3.3e-93

88.78

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Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        M AFIQAKICP TISTLDR +  ENGHKLRSRSQVVLP QE+CRR L+CNGMS VAFLTFNN  TP LA+AEE PNDKEEE+NGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESYAVLEKAIRSLAGFYAKAGPSAPLPE VKSD+LNDLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAEEF
        KAEEF
Subjt:  KAEEF

XP_023006140.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima]

6.3e-92

87.8

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Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        M AFIQAKICP TIST DR +  ENGHKLRS SQVVLP QE+CRR L+CNGMSLVAFLTFNN  TP LA+AEETPN KEEE+NGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ V+QEESYAVLEKAIRSLAGFYAKAGPSAPLPE VKSD+LNDLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAEEF
        KAEEF
Subjt:  KAEEF

XP_023549108.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo]

2.6e-93

88.78

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Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        M AFIQAKICP TISTLDR +  ENGHKLRSRSQVVLP QE+CRR+L+CNGMSLVAFLTFNN  TP LA+AEE PND EEE+NGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESYAVLEKAIRSLAGFYAKAGPSAPLPE VKSD+LNDLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAEEF
        KAEEF
Subjt:  KAEEF

XP_038875361.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida]

1.4e-94

89.27

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Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        MAAFIQA ICPTTISTLDR+++ ENGHKLRSRSQVVLP QEVCRRHLMC+GMSLV FLT NN  TPS A+AEETPND EEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQ+TVV+EESY VLEKAI+SLAGFYAKAGPSAPLPEAVKSD+L+DLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAEEF
        KAEEF
Subjt:  KAEEF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K400 Uncharacterized protein

4.4e-91

87.25

Show/hide

Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        MAAFI AKICPTTISTLDRS+  E G KL SRS+VVLP QEVCRRHL+ NGMSLV FLTFNN  TPS AQAEE PN+ EEEDNGVIGTIKSIFDPNE+TK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GK+LPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG+QTVVQEESY VLEKAIRSLAGFYAKAGPSAPLPEAVKSD+L+DLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAEE
        K EE
Subjt:  KAEE

A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

2.0e-91

87.68

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Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        MAAFIQAKICP TISTLDRS+  ENG KL SRSQV LP QE+CRRHL+ NGMSLV FLTFNN  TPS A AEE PN+ EEEDNGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESY VLEKAIRSLAGFYAKAGPSAPLPEAVKSD+L+DLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAE
        KAE
Subjt:  KAE

A0A6J1CCV0 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

8.0e-93

86.83

Show/hide

Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        MAAF+QAKICP T S+LDR  R ENG KLRSRSQVVLP QEVCRR L+CNGMSLV FL FNN S P LA+AEETPNDK+EEDNGV+G IKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GKVLPKAYLKSARE+VKTLRES+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTV QEESYA LEKAIRSLA FYAKAGPSAPLPEAVKSD+LNDLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAEEF
        KAEEF
Subjt:  KAEEF

A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.6e-93

88.78

Show/hide

Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        M AFIQAKICP TISTLDR +  ENGHKLRSRSQVVLP QE+CRR L+CNGMS VAFLTFNN  TP LA+AEE PNDKEEE+NGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESYAVLEKAIRSLAGFYAKAGPSAPLPE VKSD+LNDLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAEEF
        KAEEF
Subjt:  KAEEF

A0A6J1KWY8 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

3.1e-92

87.8

Show/hide

Query:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK
        M AFIQAKICP TIST DR +  ENGHKLRS SQVVLP QE+CRR L+CNGMSLVAFLTFNN  TP LA+AEETPN KEEE+NGVIGTIKSIFDPNERTK
Subjt:  MAAFIQAKICPTTISTLDRSVRRENGHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTK

Query:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD
        +GKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ V+QEESYAVLEKAIRSLAGFYAKAGPSAPLPE VKSD+LNDLD
Subjt:  TGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLD

Query:  KAEEF
        KAEEF
Subjt:  KAEEF

SwissProt top hits

e value

%identity

Alignment

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

4.5e-48

71.53

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Query:  AQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLE
        AQA E   +K +E  GV+G  K++FDPNERTK+GK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW GQ+TV  EESY  LE
Subjt:  AQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLE

Query:  KAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEEF
          IR+LA FY+KAGPSAPLP+ VK+++L+DL+KAEEF
Subjt:  KAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEEF

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

3.1e-04

Show/hide

Query:  YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG----QQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEE
        Y+K    V+  +R +L     D       ADA  E +R+  ++W+     ++ ++ + S+  +  A+ +++G Y   GP+AP+P   K+ +L +++ AE+
Subjt:  YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG----QQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEE

AT1G05385.1 photosystem II 11 kDa protein-related

3.2e-49

71.53

Show/hide

Query:  AQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLE
        AQA E   +K +E  GV+G  K++FDPNERTK+GK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW GQ+TV  EESY  LE
Subjt:  AQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYAVLE

Query:  KAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEEF
          IR+LA FY+KAGPSAPLP+ VK+++L+DL+KAEEF
Subjt:  KAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEEF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTTTTTGGAAGAAGGAGAAGCGCAGCAGTGAGAGAGAGAGGGAAAATGGGAATGTGAGTGCGAGCAAGAAAGAGGGAGAAAGTAAGAAGCATGATGTTTCAAAACG
TTTCTCTTCTCCGGATTTTGCTTCCGCCGATTCTCTTCGCTGGTTCGTAACTTCGTTCACTGCCGGCACGACGTTAAGAATTAGGGGAATAGCTGGGGATGAAGCCGGGC
CGCTCAACTTGGCTGGAGTAACTACAAGAACGAAGATGGCTGCATTTATTCAAGCAAAGATCTGCCCTACAACTATTTCAACATTGGATAGAAGCGTAAGAAGGGAAAAT
GGGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTTCCACCTCAAGAAGTTTGTAGACGTCATTTAATGTGTAATGGCATGTCATTGGTTGCATTTCTCACATTTAACAA
TGAATCGACACCATCTTTGGCCCAGGCCGAAGAAACACCAAATGACAAGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATTTTTGATCCAAATGAGAGAA
CCAAAACAGGGAAAGTATTGCCAAAGGCTTACCTGAAGTCTGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACCCAAAAGATGGCGCTAAATTTAGA
CGAACTGCAGATGCTGCAAAAGAATCAATTCGAGACTATTTAAGCAATTGGTTGGGGCAACAAACAGTTGTTCAGGAGGAATCTTACGCTGTGCTAGAGAAGGCAATAAG
GTCATTGGCTGGCTTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCTGTTAAATCTGATTTACTGAATGATTTGGATAAGGCTGAAGAATTCTTTTTTGTGA
GGTATGGAGCTACTTTTGTTGCTATTCTCCACCTTATTGATCATACAAAGGAATTTATGTTGAATGGATTGAAAAAGAGAAGAATCAAAACTGAGGATACATGGCTGCCC
CTGTTTCTCACTTCACTTGTATATCGGCTTTTGAACTACAATGAAAGATATCAAATTTTGTCATAG

mRNA sequence

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Protein sequence

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MIFWKKEKRSSERERENGNVSASKKEGESKKHDVSKRFSSPDFASADSLRWFVTSFTAGTTLRIRGIAGDEAGPLNLAGVTTRTKMAAFIQAKICPTTISTLDRSVRREN
GHKLRSRSQVVLPPQEVCRRHLMCNGMSLVAFLTFNNESTPSLAQAEETPNDKEEEDNGVIGTIKSIFDPNERTKTGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFR
RTADAAKESIRDYLSNWLGQQTVVQEESYAVLEKAIRSLAGFYAKAGPSAPLPEAVKSDLLNDLDKAEEFFFVRYGATFVAILHLIDHTKEFMLNGLKKRRIKTEDTWLP
LFLTSLVYRLLNYNERYQILS

CaUC06G112770 (gene) of Watermelon (USVL246-FR2) v1 genome