CuGenDBv2

Gene ID	CaUC06G112940
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	CRC domain-containing protein TSO1
Genome location	Ciama_Chr06:7670934..7672120
RNA-Seq Expression	CaUC06G112940
Synteny	CaUC06G112940
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domains	IPR044522 - CRC domain-containing protein TSO1-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057436.1 CRC domain-containing protein TSO1 [Cucumis melo var. makuwa]

1.5e-53

79.47

Show/hide

Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRSPPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPAI
        EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP HHFSPL SPKRP+FSNPSRSPP VSKNE GAVIIMDQLLEIFVP+IP     STP I
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRSPPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPAI

Query:  QPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK
         P ETV++DAG+V +FRCPIS+EA E+     EDE L QND VLD IEENK
Subjt:  QPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK

XP_004145421.1 CRC domain-containing protein TSO1 [Cucumis sativus]

2.6e-53

80.26

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRS-PPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPA
        EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP HHFSPL SPKRP+FSNPSRS PP VSKNE GAVIIMDQLLEIFVP+IP     STP 
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRS-PPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPA

Query:  IQPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK
        I PPETV++DAG+V IF CPIS+EAMEE     EDE L QNDG L  IEENK
Subjt:  IQPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK

XP_008449927.1 PREDICTED: CRC domain-containing protein TSO1, partial [Cucumis melo]

1.5e-53

79.47

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRSPPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPAI
        EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP HHFSPL SPKRP+FSNPSRSPP VSKNE GAVIIMDQLLEIFVP+IP     STP I
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRSPPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPAI

Query:  QPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK
         P ETV++DAG+V +FRCPIS+EA E+     EDE L QND VLD IEENK
Subjt:  QPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK

XP_022930289.1 CRC domain-containing protein TSO1-like [Cucurbita moschata]

1.1e-38

71.43

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQP
        EDSPVFNFINSLSPIKP+KSIHITQTFNSISFPSLPVFT          SPKRP+F NPSRS P VS NEG VIIMDQLLEIFVP+IP   DGSTP +QP
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQP

Query:  PETVNADAGQVRIFRCPISSEAMEEAIHGGEDE
        PETVN DAG+V      ISSEA+E      EDE
Subjt:  PETVNADAGQVRIFRCPISSEAMEEAIHGGEDE

XP_038906811.1 protein tesmin/TSO1-like CXC 2 [Benincasa hispida]

1.9e-67

89.26

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQP
        EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPH+FSPL SPKRP+FSNPSRSPPAVSKNEGAVIIMDQLLEIFVP+IPP  DGSTP IQP
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQP

Query:  PETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK
        PETV++DAG+V IFRCPISSEAM+ AIHG EDEGLLQND VL+RIEENK
Subjt:  PETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNU4 CRC domain-containing protein

1.3e-53

80.26

Show/hide

Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRS-PPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPA
        EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP HHFSPL SPKRP+FSNPSRS PP VSKNE GAVIIMDQLLEIFVP+IP     STP 
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRS-PPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPA

Query:  IQPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK
        I PPETV++DAG+V IF CPIS+EAMEE     EDE L QNDG L  IEENK
Subjt:  IQPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK

A0A1S3BP37 CRC domain-containing protein TSO1

7.4e-54

79.47

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRSPPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPAI
        EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP HHFSPL SPKRP+FSNPSRSPP VSKNE GAVIIMDQLLEIFVP+IP     STP I
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRSPPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPAI

Query:  QPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK
         P ETV++DAG+V +FRCPIS+EA E+     EDE L QND VLD IEENK
Subjt:  QPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK

A0A5D3E4C7 CRC domain-containing protein TSO1

7.4e-54

79.47

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRSPPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPAI
        EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP HHFSPL SPKRP+FSNPSRSPP VSKNE GAVIIMDQLLEIFVP+IP     STP I
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPP-HHFSPLNSPKRPSFSNPSRSPPAVSKNE-GAVIIMDQLLEIFVPQIPPPADGSTPAI

Query:  QPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK
         P ETV++DAG+V +FRCPIS+EA E+     EDE L QND VLD IEENK
Subjt:  QPPETVNADAGQVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENK

A0A6J1ER31 CRC domain-containing protein TSO1-like

5.1e-39

71.43

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQP
        EDSPVFNFINSLSPIKP+KSIHITQTFNSISFPSLPVFT          SPKRP+F NPSRS P VS NEG VIIMDQLLEIFVP+IP   DGSTP +QP
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQP

Query:  PETVNADAGQVRIFRCPISSEAMEEAIHGGEDE
        PETVN DAG+V      ISSEA+E      EDE
Subjt:  PETVNADAGQVRIFRCPISSEAMEEAIHGGEDE

A0A6J1KE48 protein tesmin/TSO1-like CXC 2

5.7e-38

70.68

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQP
        EDSPVFNFINSLSPIKP+KSIHITQTFNSISFPSLPVFT          SPKRP+F NPSRS P VS NEGAVIIMDQLLEIFVP+IP     +TP +QP
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQP

Query:  PETVNADAGQVRIFRCPISSEAMEEAIHGGEDE
        PETVN DAG+V      ISSEAME      EDE
Subjt:  PETVNADAGQVRIFRCPISSEAMEEAIHGGEDE

SwissProt top hits

e value

%identity

Alignment

F4JIF5 Protein tesmin/TSO1-like CXC 2

9.4e-06

50.75

Show/hide

Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLP-VFTSP----PHHFSPLNSPKRPSFSNPSRS
        EDSPVFN+INSLSPI+PV+SI     F+S++F S P VFTSP     H  S        S S+P+ S
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLP-VFTSP----PHHFSPLNSPKRPSFSNPSRS

Q9LUI3 CRC domain-containing protein TSO1

8.5e-07

69.05

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPS-LPVFTSP
        EDSPVFN+I++LSPI+ VKSI   QTF+S+SF S  PVFTSP
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPS-LPVFTSP

Arabidopsis top hits

e value

%identity

Alignment

AT3G22760.1 Tesmin/TSO1-like CXC domain-containing protein

3.1e-04

48.39

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Query:  MEDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLP-VFTSP---PHHFSPLNSPKRPSFS
        +EDSPVF++I +LSPIK +K I IT   +S+++ S P VFTSP    H  S   S K  S S
Subjt:  MEDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLP-VFTSP---PHHFSPLNSPKRPSFS

AT3G22780.1 Tesmin/TSO1-like CXC domain-containing protein

6.1e-08

69.05

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPS-LPVFTSP
        EDSPVFN+I++LSPI+ VKSI   QTF+S+SF S  PVFTSP
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPS-LPVFTSP

AT4G14770.1 TESMIN/TSO1-like CXC 2

6.7e-07

50.75

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Query:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLP-VFTSP----PHHFSPLNSPKRPSFSNPSRS
        EDSPVFN+INSLSPI+PV+SI     F+S++F S P VFTSP     H  S        S S+P+ S
Subjt:  EDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLP-VFTSP----PHHFSPLNSPKRPSFSNPSRS

Sequences

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CDS sequence

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ATGGAAGATTCACCAGTTTTCAATTTCATCAACAGTCTGTCTCCCATTAAGCCTGTTAAATCCATTCACATTACTCAAACATTCAACTCCATCTCTTTCCCTTCTCTTCC
AGTTTTCACTTCCCCACCACATCACTTTAGTCCTCTCAACTCCCCAAAAAGGCCGAGTTTTTCCAACCCTTCGAGATCCCCGCCTGCAGTTTCTAAAAATGAAGGAGCAG
TTATAATAATGGATCAGTTACTGGAGATTTTCGTGCCCCAAATTCCTCCCCCGGCCGACGGTTCAACTCCGGCAATTCAGCCACCGGAAACGGTCAATGCCGACGCCGGC
CAGGTTCGGATATTTCGTTGTCCGATTAGCTCTGAAGCTATGGAGGAGGCGATTCATGGAGGGGAAGATGAGGGATTGCTTCAAAACGACGGCGTTTTGGATAGAATAGA
GGAGAACAAGGGATCACTTGACAATGTTTTTGGTTAA

mRNA sequence

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Protein sequence

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MEDSPVFNFINSLSPIKPVKSIHITQTFNSISFPSLPVFTSPPHHFSPLNSPKRPSFSNPSRSPPAVSKNEGAVIIMDQLLEIFVPQIPPPADGSTPAIQPPETVNADAG
QVRIFRCPISSEAMEEAIHGGEDEGLLQNDGVLDRIEENKGSLDNVFG

CaUC06G112940 (gene) of Watermelon (USVL246-FR2) v1 genome