; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC06G113200 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC06G113200
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCiama_Chr06:8096525..8096887
RNA-Seq ExpressionCaUC06G113200
SyntenyCaUC06G113200
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.1e-2246.36Show/hide
Query:  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL
        MW+  N     VF+  FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL++++ +C   W L  DFNV  W  ETT+ +P+ ++MRRFNS+I+N +L
Subjt:  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL

Query:  IEPIQINGTY
        I+P   N  Y
Subjt:  IEPIQINGTY

KAA0044449.1 hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa]1.9e-1945Show/hide
Query:  DVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY
        DV +  FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L  DFNV  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Subjt:  DVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-2244.55Show/hide
Query:  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL
        MW+  N     VF+ NFS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L  DFNV  W  ET++ +P+ ++M+RFN++I+N +L
Subjt:  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL

Query:  IEPIQINGTY
        I+P   N  +
Subjt:  IEPIQINGTY

XP_011650214.1 uncharacterized protein LOC105434766 [Cucumis sativus]1.3e-2039.82Show/hide
Query:  ILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITN
        IL+MWD L H+  +     F++S   +  DG  WW++ +Y L +R +R +FW+EL N+   CG  W LA DFN   W  ET+S +P + +M +FN  I N
Subjt:  ILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITN

Query:  VDLIEPIQINGTY
        + L++P   NG+Y
Subjt:  VDLIEPIQINGTY

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]3.4e-2140.71Show/hide
Query:  ILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITN
        I+++WD L+  A +V   +FS+S+     D   WWL+G+Y    ++KR  FW+EL ++  LCG  W L  DFN+Y W+ ET+S +P Q  M +FN +I  
Subjt:  ILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITN

Query:  VDLIEPIQINGTY
          LI+P   NG Y
Subjt:  VDLIEPIQINGTY

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.5e-2246.36Show/hide
Query:  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL
        MW+  N     VF+  FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL++++ +C   W L  DFNV  W  ETT+ +P+ ++MRRFNS+I+N +L
Subjt:  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL

Query:  IEPIQINGTY
        I+P   N  Y
Subjt:  IEPIQINGTY

A0A5A7TTA1 DUF4283 domain-containing protein9.0e-2045Show/hide
Query:  DVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY
        DV +  FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L  DFNV  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Subjt:  DVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein1.1e-2244.55Show/hide
Query:  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL
        MW+  N     VF+ NFS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L  DFNV  W  ET++ +P+ ++M+RFN++I+N +L
Subjt:  MWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDL

Query:  IEPIQINGTY
        I+P   N  +
Subjt:  IEPIQINGTY

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein1.3e-1845.74Show/hide
Query:  FSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY
        FS+SIQ+   +G  WWLS IYG A R+ R  FWEEL+N++ +C   W L  DFNV  W  ET++ +P+ ++M+RFN++I+N +LI+P   N  +
Subjt:  FSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLIEPIQINGTY

A0A6J1CVN2 uncharacterized protein LOC1110146571.6e-2140.71Show/hide
Query:  ILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITN
        I+++WD L+  A +V   +FS+S+     D   WWL+G+Y    ++KR  FW+EL ++  LCG  W L  DFN+Y W+ ET+S +P Q  M +FN +I  
Subjt:  ILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITN

Query:  VDLIEPIQINGTY
          LI+P   NG Y
Subjt:  VDLIEPIQINGTY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACTGATGTATTCGAGGAGAATTTCTCCTTATCGATACAAATTATTAGAACTGATGG
TTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTT
TAGCTAGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATT
GAGCCTATACAAATCAATGGAACCTACATATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAATCACTCCAAGCATCTTAATCATGTGGGATTCTCTCAATCACAAAGCAACTGATGTATTCGAGGAGAATTTCTCCTTATCGATACAAATTATTAGAACTGATGG
TTTAATCTGGTGGTTATCTGGTATTTACGGTCTGGCAAGTAGAAGAAAGCGTATGACTTTTTGGGAAGAGCTCGACAATGTGCGATATCTATGTGGTGAGTGCTGGTTTT
TAGCTAGCGATTTCAATGTCTATTGTTGGACTTTTGAAACTACTTCTCCACATCCATCACAGATTAACATGAGAAGATTCAATTCATATATCACCAATGTTGATCTTATT
GAGCCTATACAAATCAATGGAACCTACATATAG
Protein sequenceShow/hide protein sequence
MQITPSILIMWDSLNHKATDVFEENFSLSIQIIRTDGLIWWLSGIYGLASRRKRMTFWEELDNVRYLCGECWFLASDFNVYCWTFETTSPHPSQINMRRFNSYITNVDLI
EPIQINGTYI