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CaUC06G114580 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC06G114580
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 51-like
Genome locationCiama_Chr06:10472860..10476812
RNA-Seq ExpressionCaUC06G114580
SyntenyCaUC06G114580
Gene Ontology termsGO:0003724 - RNA helicase activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR014014 - RNA helicase, DEAD-box type, Q motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584379.1 DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. sororia]3.6e-1555.67Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP
        EDGV+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI          + +P    G+   G+     G  L FLIP
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP

KAG7019966.1 DEAD-box ATP-dependent RNA helicase 27 [Cucurbita argyrosperma subsp. argyrosperma]3.6e-1555.67Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP
        EDGV+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI          + +P    G+   G+     G  L FLIP
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP

XP_022924139.1 DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita moschata]3.6e-1555.67Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP
        EDGV+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI          + +P    G+   G+     G  L FLIP
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP

XP_023520092.1 DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita pepo subsp. pepo]1.6e-1556.7Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP
        EDGV+GK EKDE K NE+KKVK GGSGIMS++ F SL+LSEKTLRAIKDMGF+HMTQI          + +P    G+   G+     G  L FLIP
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP

XP_038895340.1 DEAD-box ATP-dependent RNA helicase 51-like [Benincasa hispida]8.6e-1759.79Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP
        EDG+EGK E DE KENEEKKVK GGSGIM++++F SLDLSEKTLRAIKDMGFEHMTQI          K +P    G+   G+     G  L FLIP
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP

TrEMBL top hitse value%identityAlignment
A0A1S3C1Z8 DEAD-box ATP-dependent RNA helicase 511.9e-1454.64Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP
        EDGVE +GE+DE  E+++ KVK GGSGIMSS++F SL+LSEKTLRAIKDMGFEHMTQI          + +P    G+   G+     G  L FLIP
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP

A0A1S3CRK6 DEAD-box ATP-dependent RNA helicase 51-like1.9e-1445.04Show/hide
Query:  VPNFQSSRPRLPSSKQSTIKVKKQRMNE------EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLD
        VP  ++       +K+   K KK+   +      E+GVE + EKDE K+N++KKVK GGSGIMS+++F SL+LSEKTLRAIKDMGFEHMTQI        
Subjt:  VPNFQSSRPRLPSSKQSTIKVKKQRMNE------EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLD

Query:  LGKLLPFLYQGRGWEGS----KGNALLFLIP
          + +P    G+   G+     G  L FLIP
Subjt:  LGKLLPFLYQGRGWEGS----KGNALLFLIP

A0A5D3BGT0 DEAD-box ATP-dependent RNA helicase 511.9e-1454.64Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP
        EDGVE +GE+DE  E+++ KVK GGSGIMSS++F SL+LSEKTLRAIKDMGFEHMTQI          + +P    G+   G+     G  L FLIP
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP

A0A6J1E8A7 DEAD-box ATP-dependent RNA helicase 51-like1.8e-1555.67Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP
        EDGV+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI          + +P    G+   G+     G  L FLIP
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP

A0A6J1KNF7 DEAD-box ATP-dependent RNA helicase 511.1e-1457.73Show/hide
Query:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFL----YQGRGWEGSKGNALLFLIP
        ED V+GK EKDE K NE+KKVK GGSGIMS+++F SL+LSEKTLRAIKD+GF+HMTQI           + PFL      G    GS G  L FLIP
Subjt:  EDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFL----YQGRGWEGSKGNALLFLIP

SwissProt top hitse value%identityAlignment
Q84T03 DEAD-box ATP-dependent RNA helicase 279.3e-0637Show/hide
Query:  EEDGVEGKGEKDEVKENEEKKVK--IGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP
        EE+  E K +K+  KE + KK K   GGSGI++++ F  L +SE T RAI++M + ++TQI          + +P L  G+   G+     G  L FLIP
Subjt:  EEDGVEGKGEKDEVKENEEKKVK--IGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALLFLIP

Q9LIH9 DEAD-box ATP-dependent RNA helicase 513.1e-0942.61Show/hide
Query:  SSKQSTIKVKKQRMNEEDGVEGKGEKDEVKEN--EEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEG
        + K+S  KVKK R      +E + EK E  E+  +EK + I G GIM+++TF SLDLSE+T  AIK+MGF++MTQI         G + P L +G+   G
Subjt:  SSKQSTIKVKKQRMNEEDGVEGKGEKDEVKEN--EEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEG

Query:  S----KGNALLFLIP
        +     G  L FLIP
Subjt:  S----KGNALLFLIP

Q9SB89 DEAD-box ATP-dependent RNA helicase 271.7e-0738.46Show/hide
Query:  KKQRMNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALL
        KK++  +    E K E++EV++ EE+K K+  + IM++ TF SL LS+ T ++IK+MGF  MTQI          K +P L  G    G+     G  L 
Subjt:  KKQRMNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALL

Query:  FLIP
        FLIP
Subjt:  FLIP

Arabidopsis top hitse value%identityAlignment
AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.2e-1042.61Show/hide
Query:  SSKQSTIKVKKQRMNEEDGVEGKGEKDEVKEN--EEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEG
        + K+S  KVKK R      +E + EK E  E+  +EK + I G GIM+++TF SLDLSE+T  AIK+MGF++MTQI         G + P L +G+   G
Subjt:  SSKQSTIKVKKQRMNEEDGVEGKGEKDEVKEN--EEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEG

Query:  S----KGNALLFLIP
        +     G  L FLIP
Subjt:  S----KGNALLFLIP

AT5G65900.1 DEA(D/H)-box RNA helicase family protein1.2e-0838.46Show/hide
Query:  KKQRMNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALL
        KK++  +    E K E++EV++ EE+K K+  + IM++ TF SL LS+ T ++IK+MGF  MTQI          K +P L  G    G+     G  L 
Subjt:  KKQRMNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMSSITFHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGS----KGNALL

Query:  FLIP
        FLIP
Subjt:  FLIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCCATCACCATCGTTGTTTTTTCTATTTTCGCCACAGACGTCACCGTTTTCGTTTGATATTGCCACCGCCGTCGTCGTTGTTTGGCCCCCTCTCTCTCGA
CTCTCTCCTCATTGTCTTCTCTTCCAAGTTCCAAACTTCCAATCCAGCCGCCCTCGTCTTCCAAGTTCCAAGCAAAGCACAATCAAGGTGAAGAAGCAGAGGATG
AATGAGGAGGATGGCGTGGAAGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAGTTCCATTACA
TTTCATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATATTCTTGGAGCTGCAAGGACTGGATCTGGGA
AAACTCTTGCCTTTCTTGTACCAGGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTTGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAG
GTCTGGAGAAACTGGTTGGCATTGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
TCGTTTTCTTAAAAGATGAGAAACAGAAACTTATGAAACGGGACGTAAATGCACAATTCTTTCATCTTCCTCCCCTCCCACGTCTCTGCCTTTCTCAGATCTTCT
AGTCCTCACTCTTCAATGGTGTCATATTTCTCTTTCTCCATTTTAACAACTCACATCGCCTTCAAACTTCTCTCTGTTTAGTCTGATGCAGCCATCACCATCGTT
GTTTTTTCTATTTTCGCCACAGACGTCACCGTTTTCGTTTGATATTGCCACCGCCGTCGTCGTTGTTTGGCCCCCTCTCTCTCGACTCTCTCCTCATTGTCTTCT
CTTCCAAGTTCCAAACTTCCAATCCAGCCGCCCTCGTCTTCCAAGTTCCAAGCAAAGCACAATCAAGGTGAAGAAGCAGAGGATGAATGAGGAGGATGGCGTGGA
AGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAGTTCCATTACATTTCATTCGCTTGACTTGTC
GGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATATTCTTGGAGCTGCAAGGACTGGATCTGGGAAAACTCTTGCCTTTCTTGTA
CCAGGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTTGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAGGTCTGGAGAAACTGGTTGGC
ATTGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGATCTGCAGTGCAGGATACTGCTGCTTCATTCTGCTT
TTACGACCCTCCAAAGGTGAACCTTAACATTCACAAGCAGTGCCTCCAATTTGTAAGATACCACCTCAACTTCAAATTTCTTTGTTTAGGAGGATAGGAAATTTT
TACATTTATTTCCTCATCTTCCTTAAATAGTCTGGAAACCAGATCCCATTTTGTTTTGTATCCTAATATATTCATACCCTATTTAATCCTCTTTTTTCTTCTCAA
AATTATGTCCATATTCACATTTTAT
Protein sequenceShow/hide protein sequence
MQPSPSLFFLFSPQTSPFSFDIATAVVVVWPPLSRLSPHCLLFQVPNFQSSRPRLPSSKQSTIKVKKQRMNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMSSIT
FHSLDLSEKTLRAIKDMGFEHMTQIFLELQGLDLGKLLPFLYQGRGWEGSKGNALLFLIPEGLQFLGYLKVWRNWLALKKSAKDGYRSYILAYNSQIFS