CuGenDBv2

Gene ID	CaUC06G114860
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Photosystem II CP47 reaction center protein
Genome location	Ciama_Chr06:11266637..11267685
RNA-Seq Expression	CaUC06G114860
Synteny	CaUC06G114860
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0015977 - carbon fixation (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR017443 - Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal IPR036001 - Photosystem antenna protein-like superfamily IPR036422 - RuBisCO large subunit, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QXJ79888.1 NADH dehydrogenase subunit D [Gymnadenia crassinervis]

3.0e-15

62.5

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Query:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST
        +YPR  TLQY+YA  WN+IK+GS WI SDQYGII+ C F + +LV  SR+N+N LCSFN+F ST
Subjt:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST

RXI09986.1 hypothetical protein DVH24_037507 [Malus domestica]

2.6e-19

78.33

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Query:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNI
        ++P RGTLQYLYA   N+IKNGS WIGSDQYGIITP PFY+ +LVD+SRHNSNNLCSFNI
Subjt:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNI

VVW91355.1 unnamed protein product, partial [Nymphaea colorata]

9.6e-14

50.57

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Query:  YLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGSTLDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGI
        Y+YAS WN+IKNGS  +GS QYGIITP PF++F+LVD SR  SNNLCSFN   ST    F     +S +   GF    ++ + D G+
Subjt:  YLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGSTLDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGI

YP_009679141.1 NADH-plastoquinone oxidoreductase subunit 4 [Teucrium mascatense]

1.0e-15

67.19

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Query:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST
        +YP RGTL+YLYAS  N+IKNGS WI SD+YGII+P  F +F+LV++SR N+NNLCSFNI  ST
Subjt:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST

YP_009724473.1 NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal]

1.0e-15

68.75

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Query:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST
        ++PRRGTLQYLYA   N+IKNGS WIGS+ YGIITP  F +F+LV+  R NSNNLCSFNI  ST
Subjt:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST

TrEMBL top hits

e value

%identity

Alignment

A0A3P6E4B1 Uncharacterized protein

7.9e-14

72.22

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Query:  LYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST
        +YASRWN+IKNGS W GS+QYGIIT   FY+F+LVD SR+N NNLCSFNI  ST
Subjt:  LYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST

A0A498KQZ6 Proton_antipo_M domain-containing protein

1.3e-19

78.33

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Query:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNI
        ++P RGTLQYLYA   N+IKNGS WIGSDQYGIITP PFY+ +LVD+SRHNSNNLCSFNI
Subjt:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNI

A0A4Y6I5A8 NADH-plastoquinone oxidoreductase subunit 4

5.0e-16

67.19

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Query:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST
        +YP RGTL+YLYAS  N+IKNGS WI SD+YGII+P  F +F+LV++SR N+NNLCSFNI  ST
Subjt:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST

A0A5K1HUQ2 Proton_antipo_M domain-containing protein (Fragment)

4.7e-14

50.57

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Query:  YLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGSTLDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGI
        Y+YAS WN+IKNGS  +GS QYGIITP PF++F+LVD SR  SNNLCSFN   ST    F     +S +   GF    ++ + D G+
Subjt:  YLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGSTLDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGI

A0A650F2C7 NADH-plastoquinone oxidoreductase subunit 4

5.0e-16

68.75

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Query:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST
        ++PRRGTLQYLYA   N+IKNGS WIGS+ YGIITP  F +F+LV+  R NSNNLCSFNI  ST
Subjt:  KYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGST

SwissProt top hits

e value

%identity

Alignment

A6MMN3 Photosystem II CP47 reaction center protein

9.4e-12

72.09

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Query:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR
        L  +F I    SGL CFGF AFHVTGLY PGIWVSDPYGLTG+
Subjt:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR

A7Y3H4 Photosystem II CP47 reaction center protein

9.4e-12

72.09

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Query:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR
        L  +F I    SGL CFGF AFHVTGLY PGIWVSDPYGLTG+
Subjt:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR

A8SEC9 Photosystem II CP47 reaction center protein

9.4e-12

72.09

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Query:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR
        L  +F I    SGL CFGF AFHVTGLY PGIWVSDPYGLTG+
Subjt:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR

Q2QD63 Photosystem II CP47 reaction center protein

8.5e-13

76.74

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Query:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR
        L  +F I    SGLGCFGF AFHVTGLY PGIWVSDPYGLTGR
Subjt:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR

Q9BBQ8 Photosystem II CP47 reaction center protein

9.4e-12

72.09

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Query:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR
        L  +F I    +GL CFGF AFHVTGLY PGIWVSDPYGLTGR
Subjt:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00490.1 ribulose-bisphosphate carboxylases

2.8e-11

88.57

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Query:  AFRVTPQPRVPIEEARAAIAAESSTGTWTTVWTDG
        AFRVTPQP VP EEA AA+AAESSTGTWTTVWTDG
Subjt:  AFRVTPQPRVPIEEARAAIAAESSTGTWTTVWTDG

ATCG00680.1 photosystem II reaction center protein B

1.5e-12

69.77

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Query:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR
        L  +F I    SG+ CFGF AFHVTGLY PGIWVSDPYGLTG+
Subjt:  LDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGR

Sequences

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CDS sequence

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ATGGTAGAGTATTCATGTGGGATTTTTTCAGATTTTGTACGTGTGATACATGTTCCCTTAGCATTTCGAGTAACTCCTCAACCGAGAGTTCCAATTGAGGAAGCA
AGGGCCGCTATAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACTGATGGAGAATTCAAATACCCACGGAGAGGCACATTACAGTACTTGTATGCT
TCTCGCTGGAATATTATTAAAAATGGGAGCACATGGATTGGTTCGGATCAATATGGAATTATTACCCCATGCCCATTCTATCTTTTCACCCTGGTTGATCATAGT
AGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGTCAACGCTAGATCCTCTATTTTCTATTCCTTCACTGTTCTCAGGGTTGGGTTGCTTTGGTTTT
GATGCATTTCATGTAACCGGATTGTATGATCCGGGAATCTGGGTATCTGATCCTTATGGATTAACCGGAAGGTATCTAGATCATTAG

mRNA sequence

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Protein sequence

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MVEYSCGIFSDFVRVIHVPLAFRVTPQPRVPIEEARAAIAAESSTGTWTTVWTDGEFKYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHS
RHNSNNLCSFNIFGSTLDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGRYLDH

CaUC06G114860 (gene) of Watermelon (USVL246-FR2) v1 genome