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CaUC06G116010 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC06G116010
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionGlyco_18 domain-containing protein
Genome locationCiama_Chr06:15408705..15409234
RNA-Seq ExpressionCaUC06G116010
SyntenyCaUC06G116010
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0006032 - chitin catabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016020 - membrane (cellular component)
GO:0004568 - chitinase activity (molecular function)
GO:0008061 - chitin binding (molecular function)
InterPro domainsIPR001223 - Glycoside hydrolase family 18, catalytic domain
IPR017853 - Glycoside hydrolase superfamily
IPR029070 - Chitinase insertion domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035049.1 chitotriosidase-1-like [Cucumis melo var. makuwa]4.4e-2573.17Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        A ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS TLK+  VHG+GAP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

KAG7035664.1 Chitotriosidase-1, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-2575Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPRNKMVMGIP YGKS TLK+  VHG+GAP
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

TYK03628.1 chitotriosidase-1-like [Cucumis melo var. makuwa]4.4e-2573.17Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        A ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS TLK+  VHG+GAP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

XP_008443884.1 PREDICTED: chitotriosidase-1-like [Cucumis melo]4.4e-2573.17Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        A ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS TLK+  VHG+GAP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

XP_038878601.1 class V chitinase CHIT5b-like [Benincasa hispida]5.1e-2675.61Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        A ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS YY + SWIS  VPRNKMVMGIP YGKS TLK+  VHG+GAP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

TrEMBL top hitse value%identityAlignment
A0A0A0LWL0 Glyco_18 domain-containing protein3.6e-2573.17Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        A ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS TLK+  VHG+GAP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

A0A1S3B924 chitotriosidase-1-like2.1e-2573.17Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        A ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS TLK+  VHG+GAP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

A0A5A7T117 Chitotriosidase-1-like2.1e-2573.17Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        A ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS TLK+  VHG+GAP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

A0A5D3BXC7 Chitotriosidase-1-like2.1e-2573.17Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        A ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPR+KMVMGIP YGKS TLK+  VHG+GAP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

A0A6J1IC41 acidic mammalian chitinase-like3.6e-2575Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        ISKSLDWINV+CFDYH S DT ATGAH  LFDPH NLS +Y + SWIS  VPRNKMVMGIP YGKS TLK+  VHG+GAP
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

SwissProt top hitse value%identityAlignment
A0A072UR65 Class V chitinase CHIT5b7.0e-1042.68Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAPKL
        I+++LDW+NV+ ++  +   +  TGA    FDP  N+SV   + SWI   V   K+VMG+P YGKS  L++  VHG+GAP +
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAPKL

A0A072VEP0 Class V chitinase CHIT5a1.7e-0839.24Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGA
        I+K LDW + +CFDYH + D   T  +  L+D    +S  + ++SWI   V   K+VMG+  YG++  LK+  V+G+GA
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGA

A0A1B1J8Z2 Class V chitinase CHIT51.7e-1145.57Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGA
        I K LDW + +CFDY+ +     TG +  L+DP+ N+S  Y I SWI   VP  K+VMG+P YG++  LK+   HG+GA
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGA

O81862 Class V chitinase8.0e-0632.53Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHM--NLSVYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        + ++ SLDW+N++ +D++    +  TG    LFDP            SWI   +P  K V+G P YG +  L N+  H   AP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHM--NLSVYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

U5N4E3 Nod factor hydrolase protein 13.7e-1145.12Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAPKL
        I+K+LDW+NV+ +D   S   + TGA   +FD   N+SV   ++SWI   V   K+VMG+P YGKS  L++  VHG+GAP +
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-IYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAPKL

Arabidopsis top hitse value%identityAlignment
AT4G19720.1 Glycosyl hydrolase family protein with chitinase insertion domain2.4e-0536.36Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHM---NLSVYYIYSWISVSVPRNKMVMGIPPYG
        I K LDW+N+I +D++ S  T+  G    LFDP         Y +  WI   +P  K V+G P  G
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHM---NLSVYYIYSWISVSVPRNKMVMGIPPYG

AT4G19770.1 Glycosyl hydrolase family protein with chitinase insertion domain9.1e-0532.91Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLF----DPHMNLSVYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHG
        IS+ LDW+N+  +D++    T  TG    L+     P  +  V     WI   +P  K V+G P YG + TL +   HG
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLF----DPHMNLSVYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHG

AT4G19800.1 Glycosyl hydrolase family protein with chitinase insertion domain1.8e-0534.18Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLS-VYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGA
        IS SLDWIN++ +D++    +  TG    L+ P    S    +  W    +P  K V+G P YG + TL +  V+G  A
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLS-VYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGA

AT4G19810.1 Glycosyl hydrolase family protein with chitinase insertion domain5.7e-0732.53Show/hide
Query:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHM--NLSVYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP
        + ++ SLDW+N++ +D++    +  TG    LFDP            SWI   +P  K V+G P YG +  L N+  H   AP
Subjt:  AVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHM--NLSVYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAP

AT4G19820.1 Glycosyl hydrolase family protein with chitinase insertion domain5.3e-0527.63Show/hide
Query:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMN--LSVYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVH
        ++ SLDW+N++ +D+++S  +  T +   L+DP          + +W    +P  K V+G P YG +  L ++  H
Subjt:  ISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMN--LSVYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACGGAAGAATCTGCCGATCAAGACTCCGTTTTCAATTGGCAGCAGGGCAGTGATTTCGAAAAGTCTTGATTGGATTAACGTCATATGCTTCGACTATCAC
AAGTCATGCGACACGTTGGCGACTGGAGCTCATGTTGTATTGTTCGATCCACATATGAATTTGAGCGTCTATTATATTTATTCATGGATCTCCGTCAGCGTGCCT
CGGAACAAGATGGTTATGGGTATTCCTCCGTATGGCAAGTCTCGGACTCTAAAGAATTCTTGTGTGCATGGTCTCGGAGCACCCAAGTTGGTATTTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAACGGAAGAATCTGCCGATCAAGACTCCGTTTTCAATTGGCAGCAGGGCAGTGATTTCGAAAAGTCTTGATTGGATTAACGTCATATGCTTCGACTATCAC
AAGTCATGCGACACGTTGGCGACTGGAGCTCATGTTGTATTGTTCGATCCACATATGAATTTGAGCGTCTATTATATTTATTCATGGATCTCCGTCAGCGTGCCT
CGGAACAAGATGGTTATGGGTATTCCTCCGTATGGCAAGTCTCGGACTCTAAAGAATTCTTGTGTGCATGGTCTCGGAGCACCCAAGTTGGTATTTTTCTGA
Protein sequenceShow/hide protein sequence
MQRKNLPIKTPFSIGSRAVISKSLDWINVICFDYHKSCDTLATGAHVVLFDPHMNLSVYYIYSWISVSVPRNKMVMGIPPYGKSRTLKNSCVHGLGAPKLVFF