; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC06G116190 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC06G116190
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionribosomal protein L5
Genome locationCiama_Chr06:16294414..16295088
RNA-Seq ExpressionCaUC06G116190
SyntenyCaUC06G116190
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002132 - Ribosomal protein L5
IPR022803 - Ribosomal protein L5 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3452179.1 hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis]3.7e-4355.98Show/hide
Query:  LSLLGNHKEDSQTGLSRREAAVGIGNI--------------------------------------------------------FQFFDPFRDVSRQDPLL
        LSLLGNH+EDS+TGLS R AAVGIGN+                                                        F     + DVSRQDPLL
Subjt:  LSLLGNHKEDSQTGLSRREAAVGIGNI--------------------------------------------------------FQFFDPFRDVSRQDPLL

Query:  KLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM
        K N+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGSTG SFRSN FL SNKDKGYVSDLAR++TLRGH M
Subjt:  KLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM

KAF4349909.1 hypothetical protein G4B88_002331 [Cannabis sativa]3.3e-4753.08Show/hide
Query:  MTHTNLTLLSPILFLSLLGNHKEDSQTGLSRREAAVGIGNIFQ---------------------------------------------------------
        +THTN TLLS I+ LSLLGNH+EDS+TGLS R AAVGIGN+F                                                          
Subjt:  MTHTNLTLLSPILFLSLLGNHKEDSQTGLSRREAAVGIGNIFQ---------------------------------------------------------

Query:  ------------FFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDL
                     +  + DVSRQDPLLK N+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQT+RGSTG SFRSNPFL SNKDKGYVSDL
Subjt:  ------------FFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDL

Query:  ARKNTLRGHEM
        AR++TLRGH M
Subjt:  ARKNTLRGHEM

QHE65829.1 ribosomal protein L5 [Castanospermum australe]5.1e-4081.37Show/hide
Query:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGH
        +F  +  + DVSRQDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGSTG SFRSNPFL SNKDKGYVSDLAR++TLRGH
Subjt:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGH

Query:  EM
         M
Subjt:  EM

YP_009522804.1 ribosomal protein L5 [Styphnolobium japonicum]1.1e-3980.39Show/hide
Query:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGH
        +F  +  + DVSRQDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQ+GSTG SFRSNPFL SNKDKGYVSDLAR++TLRGH
Subjt:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGH

Query:  EM
         M
Subjt:  EM

YP_009913650.1 ribosomal protein L5 [Luffa acutangula]2.3e-4087.37Show/hide
Query:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM
        + DVSRQDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGSTG SFRSNPFLESNKDKGYVSDLAR++TLRGH M
Subjt:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM

TrEMBL top hitse value%identityAlignment
A0A385CAQ4 Ribosomal protein L55.5e-4080.39Show/hide
Query:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGH
        +F  +  + DVSRQDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQ+GSTG SFRSNPFL SNKDKGYVSDLAR++TLRGH
Subjt:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGH

Query:  EM
         M
Subjt:  EM

A0A386JNB1 Ribosomal protein L57.1e-4086.32Show/hide
Query:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM
        + DVSRQDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGSTG SFRSNPFL SNKDKGYVSDLAR++TLRGH M
Subjt:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM

A0A6B9QFQ7 Ribosomal protein L52.4e-4081.37Show/hide
Query:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGH
        +F  +  + DVSRQDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGSTG SFRSNPFL SNKDKGYVSDLAR++TLRGH
Subjt:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGH

Query:  EM
         M
Subjt:  EM

A0A7D5Y005 Ribosomal protein L51.1e-4087.37Show/hide
Query:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM
        + DVSRQDPLLKLN+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQTQRGSTG SFRSNPFLESNKDKGYVSDLAR++TLRGH M
Subjt:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM

A0A7J6DWT2 ATP-synt_C domain-containing protein1.6e-4753.08Show/hide
Query:  MTHTNLTLLSPILFLSLLGNHKEDSQTGLSRREAAVGIGNIFQ---------------------------------------------------------
        +THTN TLLS I+ LSLLGNH+EDS+TGLS R AAVGIGN+F                                                          
Subjt:  MTHTNLTLLSPILFLSLLGNHKEDSQTGLSRREAAVGIGNIFQ---------------------------------------------------------

Query:  ------------FFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDL
                     +  + DVSRQDPLLK N+A VMEVPGSCEIR +PKAPYDFIIKNGK AM+IPRGQKFIQT+RGSTG SFRSNPFL SNKDKGYVSDL
Subjt:  ------------FFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDL

Query:  ARKNTLRGHEM
        AR++TLRGH M
Subjt:  ARKNTLRGHEM

SwissProt top hitse value%identityAlignment
P26860 60S ribosomal protein L5, mitochondrial6.0e-2058.59Show/hide
Query:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQ-RGSTGNSFRSNPFL---ESNKDKGYVSDLARKNTLRGHEM
        +  V R D LLK+NY  +MEVP  C+I  +PKAP +F IKN K AM+I  GQKFIQT+ RGSTG SFR N F+   ES +D GYV+ LAR +TLRGH M
Subjt:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQ-RGSTGNSFRSNPFL---ESNKDKGYVSDLARKNTLRGHEM

P42793 60S ribosomal protein L5, mitochondrial5.8e-3982.11Show/hide
Query:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM
        + DV RQD LLKLNYA VMEVPG CEIR +PKAPY+FIIKNGK AM+IP GQKFIQTQRGSTG SFRSNPFL SNKDKGYVSDLAR++TLRGH M
Subjt:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM

P49388 60S ribosomal protein L5, mitochondrial8.7e-3574.74Show/hide
Query:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM
        + DVSRQDPLL     T+ +  GSCEIR +P  PY+FIIKNGK AM+IPRGQKFIQTQRGSTG SFRSNPFL SNKDKGYVSDLAR++TLRGH M
Subjt:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM

P51409 60S ribosomal protein L5, mitochondrial1.3e-2565.38Show/hide
Query:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPK-APYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKD-KGYVSDLARKNTLR
        +F  +  + DV RQD LLKLNYA VMEVPG C+I  +PK AP    IKNGK AM+I  GQK    QR STG SFRSNPFL SNKD KGYVSDLAR++TLR
Subjt:  IFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPK-APYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKD-KGYVSDLARKNTLR

Query:  GHEM
        GH M
Subjt:  GHEM

Q05492 60S ribosomal protein L5, mitochondrial3.0e-3577.32Show/hide
Query:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPK--APYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM
        + DV RQD LLKLN A VMEVPG CEIR +PK  + YDFIIKNGK AM+I RGQKFIQT+RGSTG SFRSNPFLESNKDKGYVSDLAR++ LRGH M
Subjt:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPK--APYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM

Arabidopsis top hitse value%identityAlignment
AT2G07725.1 Ribosomal L5P family protein3.4e-4284.21Show/hide
Query:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM
        + DVSRQDPLLK N+A VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRGSTG SFRSNPFL SNKDKGYVSDLAR++TLRGH M
Subjt:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM

ATMG00210.1 ribosomal protein L53.4e-4284.21Show/hide
Query:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM
        + DVSRQDPLLK N+A VMEVPGSCEIR +PKAPY+FIIKNGK AM+IPRGQKFIQTQRGSTG SFRSNPFL SNKDKGYVSDLAR++TLRGH M
Subjt:  FRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTGNSFRSNPFLESNKDKGYVSDLARKNTLRGHEM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCATACCAATCTTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACAAAGAGGATTCTCAGACTGGACTGAGCAGGAGGGAAGCTGCTGTCGG
TATTGGAAACATCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACGTCAGGATCCGTTGCTCAAACTAAATTACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGA
TAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGA
AACTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAACACTCTCCGAGGGCATGAAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCCATACCAATCTTACACTCCTTTCTCCTATTCTTTTTTTGTCACTTCTTGGAAATCACAAAGAGGATTCTCAGACTGGACTGAGCAGGAGGGAAGCTGCTGTCGG
TATTGGAAACATCTTTCAGTTCTTTGATCCATTTCGTGATGTATCACGTCAGGATCCGTTGCTCAAACTAAATTACGCCACCGTTATGGAAGTTCCTGGATCATGTGAGA
TAAGAGCCATACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTTGCTATGAAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGA
AACTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAAAAAACACTCTCCGAGGGCATGAAATGTAG
Protein sequenceShow/hide protein sequence
MTHTNLTLLSPILFLSLLGNHKEDSQTGLSRREAAVGIGNIFQFFDPFRDVSRQDPLLKLNYATVMEVPGSCEIRAIPKAPYDFIIKNGKFAMKIPRGQKFIQTQRGSTG
NSFRSNPFLESNKDKGYVSDLARKNTLRGHEM