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CaUC06G117730 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC06G117730
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPhenylalanine--tRNA ligase beta subunit
Genome locationCiama_Chr06:22239409..22247862
RNA-Seq ExpressionCaUC06G117730
SyntenyCaUC06G117730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2632558.1 unnamed protein product [Spirodela intermedia]6.9e-1340.94Show/hide
Query:  LLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRV--------------------AVSPPTA--------------
        LL K PSD VERKRPVL VFIPLG+           M ASP PT+KNCGI+  T I                       +V+P T+              
Subjt:  LLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRV--------------------AVSPPTA--------------

Query:  -FATANLFLSASAAAAIPSIDR------TRPMAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSFHGF
          A     +S  A  +   ID       +    I+C +V  KMMVVAH GSSL IIFTSS LVTE SFHGF
Subjt:  -FATANLFLSASAAAAIPSIDR------TRPMAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSFHGF

CAA7408874.1 unnamed protein product [Spirodela intermedia]8.4e-1940.74Show/hide
Query:  LLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGR-VAVSPPTAFATANLFLSASAAAAIPSIDRTRP---------
        LL K PSD VERKRPVL VFIPLG+           M ASP PT+KNCGI+  TL+G      PPT +ATA+   S +AAA +P++DR  P         
Subjt:  LLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGR-VAVSPPTAFATANLFLSASAAAAIPSIDRTRP---------

Query:  -------------------------------------------------MAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSFHGF
                                                           I+C +V  KMMVVAH GSSL IIFTSS LVTE SFHGF
Subjt:  -------------------------------------------------MAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSFHGF

KAE8688789.1 hypothetical protein F3Y22_tig00110956pilonHSYRG00228 [Hibiscus syriacus]1.4e-1344.03Show/hide
Query:  MKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCM-------------FVKPKMMVVAHIGSSLAI
        MKKSS PVYMKASP PT+KNCGI KNTLIG V V      AT N F+SASAAAAIP+ DRTRPMAIL               F +  MM  ++    + I
Subjt:  MKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCM-------------FVKPKMMVVAHIGSSLAI

Query:  IFT-------SSTLVTELSFHGF-------------STETAPCVSKSPSATIAALSNNL
          T             + S H                 ET   +SKSPSAT+A+LS  L
Subjt:  IFT-------SSTLVTELSFHGF-------------STETAPCVSKSPSATIAALSNNL

OAY81728.1 hypothetical protein ACMD2_20683 [Ananas comosus]1.6e-1754.81Show/hide
Query:  PSFPVTLFTTETKKLLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSID
        P  PVTL T +T   L KNPS+ V R  PVL+VFIP G    KKSSCP+Y+KASP PT+KNCGI++NTL  R+  S     AT    +S  AAAAI  ++
Subjt:  PSFPVTLFTTETKKLLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSID

Query:  RTRP
        RTRP
Subjt:  RTRP

RWW28438.1 hypothetical protein GW17_00007083 [Ensete ventricosum]6.1e-1763.41Show/hide
Query:  VFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCMFVKP
        VFIP GD VMKKSSCPVYM ASP PT +NCGIN  TL+G V V    + AT + F SASAAA IP I++ RP+ ILC  VKP
Subjt:  VFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCMFVKP

TrEMBL top hitse value%identityAlignment
A0A199VXL9 Uncharacterized protein7.7e-1854.81Show/hide
Query:  PSFPVTLFTTETKKLLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSID
        P  PVTL T +T   L KNPS+ V R  PVL+VFIP G    KKSSCP+Y+KASP PT+KNCGI++NTL  R+  S     AT    +S  AAAAI  ++
Subjt:  PSFPVTLFTTETKKLLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSID

Query:  RTRP
        RTRP
Subjt:  RTRP

A0A2N9IA49 Uncharacterized protein3.5e-1852.31Show/hide
Query:  MKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSF
        MKKSS PVYMKASPEPTKKNCGI + TLIG++ V  PTAFAT N FLS  AAAAIP +DRT P+AILC FVKP +  VA++     I       +  L  
Subjt:  MKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSF

Query:  HGFSTET-APCVS-KSPSATIAALSNNLYK
           ST   AP +S  +P   I+A ++ L +
Subjt:  HGFSTET-APCVS-KSPSATIAALSNNLYK

A0A444G0P2 Uncharacterized protein2.9e-1763.41Show/hide
Query:  VFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCMFVKP
        VFIP GD VMKKSSCPVYM ASP PT +NCGIN  TL+G V V    + AT + F SASAAA IP I++ RP+ ILC  VKP
Subjt:  VFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCMFVKP

A0A6A2ZBJ4 Uncharacterized protein6.8e-1444.03Show/hide
Query:  MKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCM-------------FVKPKMMVVAHIGSSLAI
        MKKSS PVYMKASP PT+KNCGI KNTLIG V V      AT N F+SASAAAAIP+ DRTRPMAIL               F +  MM  ++    + I
Subjt:  MKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCM-------------FVKPKMMVVAHIGSSLAI

Query:  IFT-------SSTLVTELSFHGF-------------STETAPCVSKSPSATIAALSNNL
          T             + S H                 ET   +SKSPSAT+A+LS  L
Subjt:  IFT-------SSTLVTELSFHGF-------------STETAPCVSKSPSATIAALSNNL

A0A7I8LI44 Hypothetical protein4.1e-1940.74Show/hide
Query:  LLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGR-VAVSPPTAFATANLFLSASAAAAIPSIDRTRP---------
        LL K PSD VERKRPVL VFIPLG+           M ASP PT+KNCGI+  TL+G      PPT +ATA+   S +AAA +P++DR  P         
Subjt:  LLMKNPSDKVERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGR-VAVSPPTAFATANLFLSASAAAAIPSIDRTRP---------

Query:  -------------------------------------------------MAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSFHGF
                                                           I+C +V  KMMVVAH GSSL IIFTSS LVTE SFHGF
Subjt:  -------------------------------------------------MAILCMFVKPKMMVVAHIGSSLAIIFTSSTLVTELSFHGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCAACACTCTAAACTACAAAATATGATCTACACAAATGAAGTTGTGTATCCCAAGGCCAAGACTTGTGGGATATATGTTGTGGGAGGCACTAATTTCAAG
TCACCTAGAGATGCTACAACTTTGAAGAAATGGAAGGCAGTTAGGGCTTCCATTCTCTACGTTTCGATCACTCCAAATGTTACCGACAAGAATCCTGGGAGGTTG
CCAGAGAAGAGCGAAGGAGGAGGGAGGGGGGAATTTAATGAAGACCTAATTCAACTTCGTCGAGTTAATAATTTTCGTAAAGACTACATAGATGACTTTGCAAAT
TCTGCTCGTCTTTTTCAAAGAGCTTCAGATTTAGTTAAAATTGTTACTGAACAGAGGGAAAAGGGGATCATAACAGTTAAACCTATGATCTGGAATTTGATATCC
CTTAACCCCAAAATGAGATTTGCGGCAGTGATGAGTGGAACTGGCATTACTTTATACATAAAGCATGTTACATTCTCAATCCAAACTGTCGATGATAATGTAGAG
TACAGGAGAAGGCTGAAAGGAAACCAGCCTTCTCCATCGTTTCCTGTCACCCTTTTTACAACCGAAACCAAGAAACTACTAATGAAAAACCCGAGTGATAAAGTT
GAGAGGAAGAGACCGGTACTCATAGTTTTCATTCCTTTGGGAGATTTGGTTATGAAGAAATCAAGTTGTCCTGTGTATATGAAGGCTTCACCAGAACCCACCAAG
AAAAATTGTGGGATCAATAAGAACACACTTATAGGCAGGGTAGCTGTGTCGCCACCGACTGCTTTTGCCACTGCCAACCTTTTCCTCTCAGCTAGTGCTGCTGCT
GCCATTCCAAGTATTGACAGGACAAGGCCTATGGCCATTCTCTGTATGTTTGTGAAACCTAAGATGATGGTTGTGGCCCATATTGGCAGCAGTCTTGCCATCATT
TTCACCTCCTCCACTCTCGTCACTGAGCTTAGCTTCCATGGATTTAGCACTGAAACGGCTCCATGCGTCTCAAAATCTCCTTCTGCAACAATAGCTGCCTTGTCC
AACAATCTATACAAAAAGGAATCACAAATCAATTTACTTGAAGAATTCTTTATTATCAATGAACTTACTGGAATTGTTTTGTGTGCTCAATTCTTGATGCCTGGT
CAGAAGATTCCTCATAAAGCAAACCAACATTCTGAGGAAGCTCCAAATATGAACTACAGGGCTCCCCATGCTCTTCTTGTATCTATACTTCTTGGTCCCCGAAAG
GAACAACAAAATCGCGACAAGCATCGATGCAGAACAAATCCCATACGCCCAACTCCGACCCACTTCATCTTGAATGTAAACCAGCACTGTGACAGCCATCAAAGT
CCCAGTGCTGATAAAGAAGAAGAACCTGTTAAAGAAATAGGCCATCTTAGCTTTTTCCTTCTCATCTGTCTCATCAAACTGGTTTTGGTGCCATCGCATGGCGGC
GGACGAAGCTGTGGCAGTTTTGTTGAAACTGCAAGTGCAGCAGTCCCCTATAGCAGAGATGAGAATGGTGTAATATCGGCCAAGGAAAGAATCAGCAAGAAAGCC
TCCAAGCAAACAGAGGAGAAAGCAAGTTCCCATGAAATCAGTAACGATGTTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCAACACTCTAAACTACAAAATATGATCTACACAAATGAAGTTGTGTATCCCAAGGCCAAGACTTGTGGGATATATGTTGTGGGAGGCACTAATTTCAAG
TCACCTAGAGATGCTACAACTTTGAAGAAATGGAAGGCAGTTAGGGCTTCCATTCTCTACGTTTCGATCACTCCAAATGTTACCGACAAGAATCCTGGGAGGTTG
CCAGAGAAGAGCGAAGGAGGAGGGAGGGGGGAATTTAATGAAGACCTAATTCAACTTCGTCGAGTTAATAATTTTCGTAAAGACTACATAGATGACTTTGCAAAT
TCTGCTCGTCTTTTTCAAAGAGCTTCAGATTTAGTTAAAATTGTTACTGAACAGAGGGAAAAGGGGATCATAACAGTTAAACCTATGATCTGGAATTTGATATCC
CTTAACCCCAAAATGAGATTTGCGGCAGTGATGAGTGGAACTGGCATTACTTTATACATAAAGCATGTTACATTCTCAATCCAAACTGTCGATGATAATGTAGAG
TACAGGAGAAGGCTGAAAGGAAACCAGCCTTCTCCATCGTTTCCTGTCACCCTTTTTACAACCGAAACCAAGAAACTACTAATGAAAAACCCGAGTGATAAAGTT
GAGAGGAAGAGACCGGTACTCATAGTTTTCATTCCTTTGGGAGATTTGGTTATGAAGAAATCAAGTTGTCCTGTGTATATGAAGGCTTCACCAGAACCCACCAAG
AAAAATTGTGGGATCAATAAGAACACACTTATAGGCAGGGTAGCTGTGTCGCCACCGACTGCTTTTGCCACTGCCAACCTTTTCCTCTCAGCTAGTGCTGCTGCT
GCCATTCCAAGTATTGACAGGACAAGGCCTATGGCCATTCTCTGTATGTTTGTGAAACCTAAGATGATGGTTGTGGCCCATATTGGCAGCAGTCTTGCCATCATT
TTCACCTCCTCCACTCTCGTCACTGAGCTTAGCTTCCATGGATTTAGCACTGAAACGGCTCCATGCGTCTCAAAATCTCCTTCTGCAACAATAGCTGCCTTGTCC
AACAATCTATACAAAAAGGAATCACAAATCAATTTACTTGAAGAATTCTTTATTATCAATGAACTTACTGGAATTGTTTTGTGTGCTCAATTCTTGATGCCTGGT
CAGAAGATTCCTCATAAAGCAAACCAACATTCTGAGGAAGCTCCAAATATGAACTACAGGGCTCCCCATGCTCTTCTTGTATCTATACTTCTTGGTCCCCGAAAG
GAACAACAAAATCGCGACAAGCATCGATGCAGAACAAATCCCATACGCCCAACTCCGACCCACTTCATCTTGAATGTAAACCAGCACTGTGACAGCCATCAAAGT
CCCAGTGCTGATAAAGAAGAAGAACCTGTTAAAGAAATAGGCCATCTTAGCTTTTTCCTTCTCATCTGTCTCATCAAACTGGTTTTGGTGCCATCGCATGGCGGC
GGACGAAGCTGTGGCAGTTTTGTTGAAACTGCAAGTGCAGCAGTCCCCTATAGCAGAGATGAGAATGGTGTAATATCGGCCAAGGAAAGAATCAGCAAGAAAGCC
TCCAAGCAAACAGAGGAGAAAGCAAGTTCCCATGAAATCAGTAACGATGTTGGCTGA
Protein sequenceShow/hide protein sequence
MVQHSKLQNMIYTNEVVYPKAKTCGIYVVGGTNFKSPRDATTLKKWKAVRASILYVSITPNVTDKNPGRLPEKSEGGGRGEFNEDLIQLRRVNNFRKDYIDDFAN
SARLFQRASDLVKIVTEQREKGIITVKPMIWNLISLNPKMRFAAVMSGTGITLYIKHVTFSIQTVDDNVEYRRRLKGNQPSPSFPVTLFTTETKKLLMKNPSDKV
ERKRPVLIVFIPLGDLVMKKSSCPVYMKASPEPTKKNCGINKNTLIGRVAVSPPTAFATANLFLSASAAAAIPSIDRTRPMAILCMFVKPKMMVVAHIGSSLAII
FTSSTLVTELSFHGFSTETAPCVSKSPSATIAALSNNLYKKESQINLLEEFFIINELTGIVLCAQFLMPGQKIPHKANQHSEEAPNMNYRAPHALLVSILLGPRK
EQQNRDKHRCRTNPIRPTPTHFILNVNQHCDSHQSPSADKEEEPVKEIGHLSFFLLICLIKLVLVPSHGGGRSCGSFVETASAAVPYSRDENGVISAKERISKKA
SKQTEEKASSHEISNDVG