; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC08G143950 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC08G143950
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptiontranscription factor IBH1
Genome locationCiama_Chr08:10318762..10324039
RNA-Seq ExpressionCaUC08G143950
SyntenyCaUC08G143950
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]9.9e-3566.67Show/hide
Query:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-----TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS
        MASKSG T + STSS LRLARTFLRSF+ IKSQ      S P L+R+SRRIKM AYSSMAR AGPR AWARALLF L TR  HRTL+       T     
Subjt:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-----TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS

Query:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
         RSD++VGKLRRL+PGG+ MDVCTLLEET  YI CLS QVK
Subjt:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]9.5e-3868.53Show/hide
Query:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-------TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTP
        MAS+SG T MNS+SS LRLARTFLRSFS+IKS+        S+  L+R+SRRIK+AAYSSMARVAGP+RAWARALLF L+TR  H TLM        +T 
Subjt:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-------TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTP

Query:  PSSRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
        PS+  D+ VGKLRRLLPGGD MDVCTLLEETA+YIHCLS QVK
Subjt:  PSSRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]7.1e-4172.34Show/hide
Query:  SKSGITLMNSTSSRLRLARTFLRSFSKIKSQTSS-------PHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS
        SKS ITL+NSTSSR R ARTFLR FS+IKSQ S+         LKRQS+RIKM AYSSMARVAGPRRAWARALLF L TRP HRTLM           PS
Subjt:  SKSGITLMNSTSSRLRLARTFLRSFSKIKSQTSS-------PHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS

Query:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
        +  D+QVGKLRRLLPGG+ MDVCTLLEETANYIHCLSTQVK
Subjt:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]6.2e-3767.13Show/hide
Query:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-------TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTP
        MA +SGIT MNS+SS LRLARTFLRSFS+IKS+        S+  L+R+SRRIK+AAYSSMARVAGP+R WARALLF L+TR  HRT M        +T 
Subjt:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-------TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTP

Query:  PSSRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
        PS+  D+ VGKLRRL+PGGD MDVCTLLEETA+YIHCLS QVK
Subjt:  PSSRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

XP_023548405.1 transcription factor IBH1 [Cucurbita pepo subsp. pepo]3.7e-3465.96Show/hide
Query:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-----TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS
        MASKSG T + STS+ LRLARTFLRSF+ IKSQ      S P LKRQSRRIKM AYSSMAR AGPR AWARALLF L  R  HRTL+       T     
Subjt:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-----TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS

Query:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
          SD++VGKLRRL+PGG+RMDVC+LLEET  YI CL TQVK
Subjt:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein7.4e-3670.15Show/hide
Query:  SKSGITLMNSTSSRLRLARTFLRSFSKIKSQTSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPSSRSDNQV
        SKS ITL+NSTSSRL  ART     S   +      LKRQSRRIKMAAYSSMARVAG RRAWARALLF LHTRP H+TLM           PS+ SD+ V
Subjt:  SKSGITLMNSTSSRLRLARTFLRSFSKIKSQTSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPSSRSDNQV

Query:  GKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
        GKLRRLLPGG+ MDVCTLLEETANYIHCLSTQVK
Subjt:  GKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

A0A1S3CLD3 transcription factor IBH13.4e-4172.34Show/hide
Query:  SKSGITLMNSTSSRLRLARTFLRSFSKIKSQTSS-------PHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS
        SKS ITL+NSTSSR R ARTFLR FS+IKSQ S+         LKRQS+RIKM AYSSMARVAGPRRAWARALLF L TRP HRTLM           PS
Subjt:  SKSGITLMNSTSSRLRLARTFLRSFSKIKSQTSS-------PHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS

Query:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
        +  D+QVGKLRRLLPGG+ MDVCTLLEETANYIHCLSTQVK
Subjt:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

A0A2N9I4P0 Uncharacterized protein1.8e-2145.33Show/hide
Query:  GITLMNSTSSRLRLARTFLRSFSKIK----SQTSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTH---------------RTLMNTPP
        G+TL N+ S R++ AR F+R+ SK+K    S +S   ++++S+RIK+AAYSSMA   G ++AW+RA+LF L  R  H               R + N PP
Subjt:  GITLMNSTSSRLRLARTFLRSFSKIK----SQTSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTH---------------RTLMNTPP

Query:  GASTTTPPSSRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
        G            NQ  KLR+L+PGG  MD+C+LLEETA+YI CLSTQVK
Subjt:  GASTTTPPSSRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

A0A5D3BPL2 Transcription factor IBH13.4e-4172.34Show/hide
Query:  SKSGITLMNSTSSRLRLARTFLRSFSKIKSQTSS-------PHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS
        SKS ITL+NSTSSR R ARTFLR FS+IKSQ S+         LKRQS+RIKM AYSSMARVAGPRRAWARALLF L TRP HRTLM           PS
Subjt:  SKSGITLMNSTSSRLRLARTFLRSFSKIKSQTSS-------PHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPS

Query:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
        +  D+QVGKLRRLLPGG+ MDVCTLLEETANYIHCLSTQVK
Subjt:  SRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

A0A6J1KS83 transcription factor IBH13.0e-3767.13Show/hide
Query:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-------TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTP
        MA +SGIT MNS+SS LRLARTFLRSFS+IKS+        S+  L+R+SRRIK+AAYSSMARVAGP+R WARALLF L+TR  HRT M        +T 
Subjt:  MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQ-------TSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTP

Query:  PSSRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
        PS+  D+ VGKLRRL+PGGD MDVCTLLEETA+YIHCLS QVK
Subjt:  PSSRSDNQVGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH13.0e-1035.44Show/hide
Query:  STSSRLRLARTFLRSFSKIKSQTSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLM-----------------------------
        + +++  LA  FLR+ S+I   T    + R++R I+ AAYSSMAR A PRRAW+RALL     R + RTLM                             
Subjt:  STSSRLRLARTFLRSFSKIKSQTSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLM-----------------------------

Query:  -NTPPGASTTTPPSSRSDNQ---VGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
              A+   PP  R   +      LRRL+PGG  M+  +LLEETA+Y+  L  QV+
Subjt:  -NTPPGASTTTPPSSRSDNQ---VGKLRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

Q7XR02 Transcription factor IBH11.8e-1035.44Show/hide
Query:  STSSRLRLARTFLRSFSKIKSQTSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLM-----------------------------
        + +++  LA  FLR+ S+I   T    + R++R I+ AAYSSMAR A PRRAW+RALL  +  R + RTLM                             
Subjt:  STSSRLRLARTFLRSFSKIKSQTSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLM-----------------------------

Query:  -NTPPGASTTTPPSSRSDNQVGK---LRRLLPGGDRMDVCTLLEETANYIHCLSTQVK
              A+   PP  R   +  +   LRRL+PGG  M+  +LLEETA+Y+  L  QV+
Subjt:  -NTPPGASTTTPPSSRSDNQVGK---LRRLLPGGDRMDVCTLLEETANYIHCLSTQVK

Q9SKX1 Transcription factor IBH15.3e-0740Show/hide
Query:  FLRSFSKIKSQT--SSPHLKR-QSRRIKMAAYSSMARVA-GPRRAWARALL------FNLHTRPTHRT-LMNTPPGASTTTPPSSRSDNQVGKLRRLLPG
        FL+S S ++ Q    +P  K  + R+IK AAY SMAR A G  R W+RALL       N   R + R   +++    S    P    +    +LR L+PG
Subjt:  FLRSFSKIKSQT--SSPHLKR-QSRRIKMAAYSSMARVA-GPRRAWARALL------FNLHTRPTHRT-LMNTPPGASTTTPPSSRSDNQVGKLRRLLPG

Query:  GDRMDVCTLLEETANYIHCLSTQVK
        G  M+   L+EETA+YI CLS QVK
Subjt:  GDRMDVCTLLEETANYIHCLSTQVK

Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 13.8e-0840Show/hide
Query:  FLRSFSKIKSQT--SSPHLKR-QSRRIKMAAYSSMARVA-GPRRAWARALL------FNLHTRPTHRT-LMNTPPGASTTTPPSSRSDNQVGKLRRLLPG
        FL+S S ++ Q    +P  K  + R+IK AAY SMAR A G  R W+RALL       N   R + R   +++    S    P    +    +LR L+PG
Subjt:  FLRSFSKIKSQT--SSPHLKR-QSRRIKMAAYSSMARVA-GPRRAWARALL------FNLHTRPTHRT-LMNTPPGASTTTPPSSRSDNQVGKLRRLLPG

Query:  GDRMDVCTLLEETANYIHCLSTQVK
        G  M+   L+EETA+YI CLS QVK
Subjt:  GDRMDVCTLLEETANYIHCLSTQVK

AT4G30180.1 sequence-specific DNA binding transcription factors;transcription regulators7.4e-0435.8Show/hide
Query:  AWARALLFNL--HTRPTHRTLMNTPPGASTTTPPSSRSDNQVG-------KLRRLLPGGDRMDVCTLLEETANYIHCLSTQ
        AW+R LL  L   + PT  T  ++  G      P     N+ G       +L++LLPGG+ M+V  +L E  NYI CL  Q
Subjt:  AWARALLFNL--HTRPTHRTLMNTPPGASTTTPPSSRSDNQVG-------KLRRLLPGGDRMDVCTLLEETANYIHCLSTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTAAATCAGGTATAACCCTAATGAATTCAACCTCGTCCCGCCTCCGTCTCGCTCGAACCTTCCTCCGATCCTTCTCCAAAATCAAATCCCAAACCTCATCTCC
ACACCTCAAACGCCAGAGCCGACGGATAAAGATGGCTGCATACTCCTCCATGGCTCGCGTCGCCGGCCCAAGGAGAGCTTGGGCTAGAGCCCTGCTCTTCAACCTCCACA
CGCGACCTACACACAGGACTCTAATGAATACACCCCCTGGTGCCTCCACGACCACACCACCCTCCTCTCGCTCCGACAACCAAGTCGGGAAGCTCCGCCGCCTGCTCCCC
GGTGGCGATAGGATGGACGTTTGCACCTTGCTGGAGGAAACTGCTAATTACATCCATTGCTTGTCCACACAAGTTAAGCCTTCCTCTCCAACCCCTCGACGGTCAAACTC
TATCTCTCTGCCCCGATCGGAAAGTTCTCTGCCGCTAGCCATCCGTCGCGCCTCACGCCGCAGCCGCACGAACCGCCATCGGGACTCATCGCCGACAATCGCGTTGCTGG
ATCTCGTCGCCCCAGCCGGTCCCTATCCATCAGATGCATCGGTTGCCGACCGTCCGCGTGCCGTCGACTGGTCGTCGGTCGTCCAAAGCCTCGCACCGCTGTTTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTAAATCAGGTATAACCCTAATGAATTCAACCTCGTCCCGCCTCCGTCTCGCTCGAACCTTCCTCCGATCCTTCTCCAAAATCAAATCCCAAACCTCATCTCC
ACACCTCAAACGCCAGAGCCGACGGATAAAGATGGCTGCATACTCCTCCATGGCTCGCGTCGCCGGCCCAAGGAGAGCTTGGGCTAGAGCCCTGCTCTTCAACCTCCACA
CGCGACCTACACACAGGACTCTAATGAATACACCCCCTGGTGCCTCCACGACCACACCACCCTCCTCTCGCTCCGACAACCAAGTCGGGAAGCTCCGCCGCCTGCTCCCC
GGTGGCGATAGGATGGACGTTTGCACCTTGCTGGAGGAAACTGCTAATTACATCCATTGCTTGTCCACACAAGTTAAGCCTTCCTCTCCAACCCCTCGACGGTCAAACTC
TATCTCTCTGCCCCGATCGGAAAGTTCTCTGCCGCTAGCCATCCGTCGCGCCTCACGCCGCAGCCGCACGAACCGCCATCGGGACTCATCGCCGACAATCGCGTTGCTGG
ATCTCGTCGCCCCAGCCGGTCCCTATCCATCAGATGCATCGGTTGCCGACCGTCCGCGTGCCGTCGACTGGTCGTCGGTCGTCCAAAGCCTCGCACCGCTGTTTGATTGA
Protein sequenceShow/hide protein sequence
MASKSGITLMNSTSSRLRLARTFLRSFSKIKSQTSSPHLKRQSRRIKMAAYSSMARVAGPRRAWARALLFNLHTRPTHRTLMNTPPGASTTTPPSSRSDNQVGKLRRLLP
GGDRMDVCTLLEETANYIHCLSTQVKPSSPTPRRSNSISLPRSESSLPLAIRRASRRSRTNRHRDSSPTIALLDLVAPAGPYPSDASVADRPRAVDWSSVVQSLAPLFD