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CaUC08G144020 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC08G144020
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationCiama_Chr08:10743716..10744093
RNA-Seq ExpressionCaUC08G144020
SyntenyCaUC08G144020
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068064.1 polygalacturonase [Cucumis melo var. makuwa]1.5e-4081.25Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCPSH GCP+KASG+KI+DVTYQ+IHGTSATK+AVKFDCSP+NPC  IKLE+V+L Y NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

TYK06443.1 polygalacturonase [Cucumis melo var. makuwa]2.0e-4081.25Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCPSH GCP+KASG+KI+DVTYQ+IHGTSATK+AVKFDCSP+NPC  IKLE+V+L Y NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

XP_008460449.1 PREDICTED: polygalacturonase-like [Cucumis melo]1.5e-4081.25Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCPSH GCP+KASG+KI+DVTYQ+IHGTSATK+AVKFDCSP+NPC  IKLE+V+L Y NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

XP_011652823.2 polygalacturonase [Cucumis sativus]5.3e-4184.38Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCPSH GCP+KASG+KI+DVTYQ+IHGTSATKVAVKFDCSP NPC RIKLE+VKL Y NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

XP_011652824.2 polygalacturonase [Cucumis sativus]1.2e-4083.33Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCPSH GCP+KASG+KI+DVTYQ+IHGTSATKVAVKFDCSP NPC RIKL++VKL Y NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

TrEMBL top hitse value%identityAlignment
A0A0A0LCF2 Uncharacterized protein2.6e-4184.38Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCPSH GCP+KASG+KI+DVTYQ+IHGTSATKVAVKFDCSP NPC RIKLE+VKL Y NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

A0A1S3CCL4 polygalacturonase-like7.4e-4181.25Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCPSH GCP+KASG+KI+DVTYQ+IHGTSATK+AVKFDCSP+NPC  IKLE+V+L Y NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

A0A5A7VKX0 Polygalacturonase7.4e-4181.25Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCPSH GCP+KASG+KI+DVTYQ+IHGTSATK+AVKFDCSP+NPC  IKLE+V+L Y NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

A0A5D3C3E8 Polygalacturonase9.7e-4181.25Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCPSH GCP+KASG+KI+DVTYQ+IHGTSATK+AVKFDCSP+NPC  IKLE+V+L Y NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

A0A5D3DTW1 Polygalacturonase5.3e-3980.21Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF
        MDNVQNPI+IDQNYCP H GCP KASG+KI+DVTYQ+IHGTSATKVAVKFDCSP+NPC  IKLE+V+L + NQ AQATCNNVGGIA G VQP+SCF
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF

SwissProt top hitse value%identityAlignment
O22818 Probable polygalacturonase At2g438601.3e-1847.37Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSC
        M  V+NPI+IDQ+YC  H  CP + SG+K+S+V Y++IHGTS T+VAV  DCS   PC  I ++ V L   ++ AQA+C+N  G A   V  + C
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSC

P35336 Polygalacturonase1.9e-1748.39Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKL-CYTNQIAQATCNNVGGIATGQVQP
        M NV+NPI+IDQNYC     C +++S +++ +V YQNI GT A+ VA+ FDCS   PC  I LE V L       A+A CNNV    TG V P
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKL-CYTNQIAQATCNNVGGIATGQVQP

P48979 Polygalacturonase4.6e-3263.16Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSC
        M NV+NPI+IDQ+YCP + GCP + SG++ISDVTY++IHGTSAT+VAVKFDCSP +PC  IKLE VKL Y NQ A+++C++  G   G VQP+SC
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSC

Q9FY19 Polygalacturonase5.5e-1746.81Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTN-QIAQATCNNVGGIATGQVQPS
        M N +NPILI+Q YC S   C ++ S +KI DVT++NIHGTSAT  A++  CS S PC+ IKL +V L  T+ ++A     N  G  T  + PS
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTN-QIAQATCNNVGGIATGQVQPS

Q9SFB7 Polygalacturonase QRT29.4e-1743.62Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQ--IAQATCNNVGGIATGQVQP
        M NV NPI+I+Q+YC     CP++ S +++S+V Y+NI GTS+  +AVKF CS + PC  I +++VKL    Q  +++A+C+NV     G V P
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQ--IAQATCNNVGGIATGQVQP

Arabidopsis top hitse value%identityAlignment
AT1G05650.1 Pectin lyase-like superfamily protein1.9e-2556.25Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQI-AQATCNNVGGIATGQVQPSSC
        M NVQNPI+IDQNYCPS+ GCP + SG+KI+ VTY+NI GTSAT+ A+K  CS SNPC  I L+ +KL Y     A + C N  G   G +QP+SC
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQI-AQATCNNVGGIATGQVQPSSC

AT1G05660.1 Pectin lyase-like superfamily protein6.7e-2655.21Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQI-AQATCNNVGGIATGQVQPSSC
        M NV+NPI+IDQNYCP+H GCP++ SG+KIS VTY+NI GTSAT+ A+K  CS S+PC  I L+ +KL Y     A + C N  G + G +QP+SC
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQI-AQATCNNVGGIATGQVQPSSC

AT2G43870.1 Pectin lyase-like superfamily protein3.5e-2759.14Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPS
        M+NV+NPI+IDQNYCP H  CP + SGIKISDV + +IHGTSAT+V VK DCS   PC  I+LE VKL Y N+ A + C + GGI  G  QP+
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPS

AT2G43890.1 Pectin lyase-like superfamily protein1.4e-2854.74Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSC
        M NVQNPI++DQNYCPS+ GCP + SG+KIS V Y+NI GTS T+ A+ FDCS SNPC  I+L  +KL +  + A +TC N+ G+  G V P  C
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSC

AT3G59850.1 Pectin lyase-like superfamily protein1.2e-2755.79Show/hide
Query:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSC
        M+NVQNPI+IDQNYCP +  CP++ SGIKISDV + +IHGTSAT+V VK DCS   PC  I+++ VKL Y N+ A   C++ GG   G  +P+SC
Subjt:  MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATGTGCAGAACCCAATTCTTATTGATCAAAACTATTGTCCAAGCCATACAGGATGTCCGGACAAGGCTTCAGGAATTAAAATTAGCGACGTGACATACCAAAA
CATTCATGGAACATCAGCTACAAAAGTTGCAGTAAAATTTGATTGTAGTCCATCAAATCCGTGCAATCGAATAAAGTTGGAGCATGTAAAGCTTTGTTATACGAATCAAA
TAGCCCAAGCAACATGCAACAATGTTGGAGGGATTGCTACAGGTCAGGTTCAGCCTTCTAGTTGCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAATGTGCAGAACCCAATTCTTATTGATCAAAACTATTGTCCAAGCCATACAGGATGTCCGGACAAGGCTTCAGGAATTAAAATTAGCGACGTGACATACCAAAA
CATTCATGGAACATCAGCTACAAAAGTTGCAGTAAAATTTGATTGTAGTCCATCAAATCCGTGCAATCGAATAAAGTTGGAGCATGTAAAGCTTTGTTATACGAATCAAA
TAGCCCAAGCAACATGCAACAATGTTGGAGGGATTGCTACAGGTCAGGTTCAGCCTTCTAGTTGCTTCTAG
Protein sequenceShow/hide protein sequence
MDNVQNPILIDQNYCPSHTGCPDKASGIKISDVTYQNIHGTSATKVAVKFDCSPSNPCNRIKLEHVKLCYTNQIAQATCNNVGGIATGQVQPSSCF