CuGenDBv2

Gene ID	CaUC08G144050
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Photosystem II CP47 reaction center protein
Genome location	Ciama_Chr08:10830435..10832201
RNA-Seq Expression	CaUC08G144050
Synteny	CaUC08G144050
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AFU94310.1 PsbB, partial [Byrsonima crassifolia]

3.2e-82

96.82

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

AFU94313.1 PsbB, partial [Centroplacus glaucinus]

4.2e-82

96.18

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHP+FRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

YP_009469276.1 photosystem II CP47 chlorophyll apoprotein [Byrsonima coccolobifolia]

3.2e-82

96.82

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

YP_009486654.1 photosystem II CP47 chlorophyll apoprotein [Bauhinia binata]

4.2e-82

96.18

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHP+FRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

YP_009669012.1 photosystem II 47 kDa protein [Galphimia angustifolia]

3.2e-82

96.82

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

TrEMBL top hits

e value

%identity

Alignment

A0A2L1IP31 Photosystem II CP47 reaction center protein

1.6e-82

96.82

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

A0A2L1IPB9 Photosystem II CP47 reaction center protein

1.6e-82

96.82

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

A0A4Y5PPK6 Photosystem II CP47 reaction center protein

1.6e-82

96.82

Show/hide

Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

A0A6C0RVX6 Photosystem II CP47 reaction center protein

2.0e-82

96.18

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHP+FRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

K4K7T0 Photosystem II CP47 reaction center protein (Fragment)

1.6e-82

96.82

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDEDGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

SwissProt top hits

e value

%identity

Alignment

A9LYC6 Photosystem II CP47 reaction center protein

2.7e-84

96.18

Show/hide

Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVD DGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

P05641 Photosystem II CP47 reaction center protein

2.7e-84

95.54

Show/hide

Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDE+GIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHA+FALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

Q2QD63 Photosystem II CP47 reaction center protein

2.7e-84

96.18

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVD DGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

Q3V508 Photosystem II CP47 reaction center protein

2.7e-84

96.18

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVD DGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

Q6L376 Photosystem II CP47 reaction center protein

2.7e-84

95.54

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Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFRDKEGRELFV RMPTFFETFPVVLVDE+GIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHA+FALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00680.1 photosystem II reaction center protein B

7.4e-85

95.54

Show/hide

Query:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
        RAGSMDNGDGIAVGWLGHPVFR+KEGRELFV RMPTFFETFPVVLVD DGIVRADVPFRR ESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ
Subjt:  RAGSMDNGDGIAVGWLGHPVFRDKEGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQ

Query:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL
        LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV  G+
Subjt:  LGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVLLGL

Sequences

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CDS sequence

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TGTGTCAAAGTTGAAGGGCTGATTCTAAAATCAATTTCCTTCAAACAATGGGTAAAGAGGAGAGTATTACCATATGGTCTGACACATTCAAAATTTCAATTTCCTCGTAC
TTGTTCAGTTTCTGAAAGTAATCTTCATAGAACTCCTGGAATACTGTCAAACGATCGTTTAAAAAGTGTTGCCGTGGTCGGCGACAAGGTTAACGGTGGAAAACGTCGCC
GACAAGCTGTACAGACTGGCCAGACATCACGAGAAACGCGAGCGGGTTCCATGGACAACGGGGATGGAATAGCTGTTGGGTGGTTAGGACACCCTGTTTTTAGAGATAAA
GAAGGGCGCGAACTTTTTGTATGCCGTATGCCGACCTTTTTTGAAACATTTCCCGTTGTTTTGGTAGACGAAGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGAGT
AGAATCGAAGTATAGTGTTGAACAGGTCGGTGTAACTGTTGAGTTCTATGGCGGTGAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGAC
GTGCTCAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGGGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACTTTTGGGCATGCTTCGTTTGCT
TTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAG

mRNA sequence

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Protein sequence

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CVKVEGLILKSISFKQWVKRRVLPYGLTHSKFQFPRTCSVSESNLHRTPGILSNDRLKSVAVVGDKVNGGKRRRQAVQTGQTSRETRAGSMDNGDGIAVGWLGHPVFRDK
EGRELFVCRMPTFFETFPVVLVDEDGIVRADVPFRRVESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFA
LLFFFGHIWHGARTLFRDVLLGLTQIWTLK

CaUC08G144050 (gene) of Watermelon (USVL246-FR2) v1 genome