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CaUC08G144160 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC08G144160
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTransposon Tf2-12 polyprotein
Genome locationCiama_Chr08:11338374..11338829
RNA-Seq ExpressionCaUC08G144160
SyntenyCaUC08G144160
Gene Ontology termsGO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN80068.1 hypothetical protein VITISV_019029 [Vitis vinifera]4.6e-1344.55Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVD----EAQVPLAKPRGD
        L+P+H+D++DP R +SKRAPT VVT +DK+VE ILA R + R+GVP   E+LVKW+GLP++E     +  +    +   +FR +     A+  L  PRG 
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVD----EAQVPLAKPRGD

Query:  R
        R
Subjt:  R

GEY47260.1 hypothetical protein CTI12_AA187700 [Tanacetum cinerariifolium]3.5e-1361.29Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTE
        L+P+H DEEDPER +SKRAPT VVT +D++VE IL+ R + R+GVPS  E+L+KW+ LPD+E
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTE

GEY98968.1 hypothetical protein [Tanacetum cinerariifolium]2.0e-1361.29Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTE
        L+P+H+DEEDPER +SKRAPT VVT +D++VE IL+ R + R+GVPS  E+L+KW+ LPD+E
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTE

RVW30604.1 Transposon Tf2-2 polyprotein [Vitis vinifera]2.7e-1345.35Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVDEA
        L+P+H+D++DP R +SKRAPT VVT +DK+VE I+A R + R+GVP  +E+LVKW+GLP++E     +  +    +   +FR ++A
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVDEA

RVW78765.1 Transposon Ty3-I Gag-Pol polyprotein [Vitis vinifera]2.0e-1346.51Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEIHISGG--VCHVSKSPSKFRVDEA
        L+P+H+D++DP R +SKRAPT VVT +DK+VE I+A R + R+GVP  +E+LVKW+GLP++E     G  +    +   +FR ++A
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEIHISGG--VCHVSKSPSKFRVDEA

TrEMBL top hitse value%identityAlignment
A0A438C8Y4 Chromo domain-containing protein2.9e-1346.51Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVDEA
        L+P+H+D++DP R +SKRAPT VVT +DK+VE I+A R + R+GVP   E+LVKW+GLP++E     +     V  +  +FR ++A
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVDEA

A0A438D587 Reverse transcriptase1.3e-1345.35Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVDEA
        L+P+H+D++DP R +SKRAPT VVT +DK+VE I+A R + R+GVP  +E+LVKW+GLP++E     +  +    +   +FR ++A
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVDEA

A0A438GNZ7 Transposon Tf2-12 polyprotein3.8e-1345.35Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVDEA
        L+P+H+D++DP R +SKRAPT VVT +DK+VE I+A R + R+GVP   E+LVKW+GLP++E     +  +    +   +FR ++A
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVDEA

A0A438H2P7 Reverse transcriptase9.9e-1446.51Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEIHISGG--VCHVSKSPSKFRVDEA
        L+P+H+D++DP R +SKRAPT VVT +DK+VE I+A R + R+GVP  +E+LVKW+GLP++E     G  +    +   +FR ++A
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEIHISGG--VCHVSKSPSKFRVDEA

A5AHG7 Uncharacterized protein2.2e-1344.55Show/hide
Query:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVD----EAQVPLAKPRGD
        L+P+H+D++DP R +SKRAPT VVT +DK+VE ILA R + R+GVP   E+LVKW+GLP++E     +  +    +   +FR +     A+  L  PRG 
Subjt:  LEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEI--HISGGVCHVSKSPSKFRVD----EAQVPLAKPRGD

Query:  R
        R
Subjt:  R

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAGCCTTTTCATCAAGACGAGGAAGACCCCGAAAGAGTCATCTCCAAGAGAGCCCCAACACGGGTTGTGACTGAACATGACAAACAAGTTGAGGCCATCTTGGC
ACACAGGAGGGTAAGCAGACAAGGAGTCCCAAGTCGCATAGAATTTCTAGTGAAATGGCAGGGACTCCCCGACACCGAGATCCACATAAGTGGGGGAGTGTGTCACGTGT
CAAAATCGCCCTCTAAATTTCGCGTTGATGAGGCGCAAGTCCCCCTAGCAAAGCCAAGAGGGGACCGCAACATTGGCAATCGCAGCCCACCAAGAGACTCTGTGCGGGTG
CTGCGCCCCACTGGCCCGCACAGCACCATGCATTCAACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAGCCTTTTCATCAAGACGAGGAAGACCCCGAAAGAGTCATCTCCAAGAGAGCCCCAACACGGGTTGTGACTGAACATGACAAACAAGTTGAGGCCATCTTGGC
ACACAGGAGGGTAAGCAGACAAGGAGTCCCAAGTCGCATAGAATTTCTAGTGAAATGGCAGGGACTCCCCGACACCGAGATCCACATAAGTGGGGGAGTGTGTCACGTGT
CAAAATCGCCCTCTAAATTTCGCGTTGATGAGGCGCAAGTCCCCCTAGCAAAGCCAAGAGGGGACCGCAACATTGGCAATCGCAGCCCACCAAGAGACTCTGTGCGGGTG
CTGCGCCCCACTGGCCCGCACAGCACCATGCATTCAACGTGA
Protein sequenceShow/hide protein sequence
MLEPFHQDEEDPERVISKRAPTRVVTEHDKQVEAILAHRRVSRQGVPSRIEFLVKWQGLPDTEIHISGGVCHVSKSPSKFRVDEAQVPLAKPRGDRNIGNRSPPRDSVRV
LRPTGPHSTMHST