; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC08G144330 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC08G144330
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrotransposon gag protein
Genome locationCiama_Chr08:11958494..11967063
RNA-Seq ExpressionCaUC08G144330
SyntenyCaUC08G144330
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-1573.44Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT +Q +R+MK LKAK FHE+N+D+KIHSRVPSR KRKLSVDIN EGSLTVKP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-1571.88Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT +Q +R+MK LKAK FHE+N+D+KIHSRVPSR KRKLSVDIN EGSLT+KP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
KAA0065608.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-1573.44Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT +Q +++MK LKAK FHE+N D+KIHSRVPSRKKRKLSVDIN EGSLTVKP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-1573.44Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT +Q +R+MK LKAK FHE+N+D+KIHSRVPSR KRKLSVDIN EGSLTVKP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-1575Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT NQ +R+MK  KAK FHEQN+D KIHSRVPSR KRKLSVDIN EGSLTVKP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein1.2e-1573.44Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT +Q +R+MK LKAK FHE+N+D+KIHSRVPSR KRKLSVDIN EGSLTVKP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
A0A5A7VRG7 Retrotransposon gag protein1.5e-1573.44Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT +Q +R+MK LKAK FHE+N+D+KIHSRVPSR KRKLSVDIN EGSLTVKP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
A0A5D3BBF9 Gag protease polyprotein1.5e-1573.44Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT +Q +R+MK LKAK FHE+N D+KIHSRVPSR KRKLSVDIN EGSLTVKP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
A0A5D3CA53 Retrotransposon gag protein8.8e-1673.44Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT +Q +++MK LKAK FHE+N D+KIHSRVPSRKKRKLSVDIN EGSLTVKP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
A0A5D3D209 Retrotransposon gag protein8.8e-1675Show/hide
Query:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
        MT NQ +R+MK  KAK FHEQN+D KIHSRVPSR KRKLSVDIN EGSLTVKP+ II TNP +E
Subjt:  MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGCAATCAACATGAAAGAAAGATGAAAATTTTGAAAGCAAAATCATTTCATGAACAAAATAACGACGAGAAGATTCACAGTCGTGTCCCTTCACGCAAGAAGAG
GAAGTTGTCTGTTGACATAAATATAGAAGGTTCATTGACGGTGAAGCCAAAACTCATCATATTAACGAATCCTACAGATGAAGAGATCAAGCCCGCTCCATCTCTAAATG
TTGGTGTAGCTTCACTCCATCTCCAATATGGAGGTGCAACTTCATGCCATCTCCAAAATCTTGGTGCAACTCTGCCTCCTCTCCAAAATGTTGGTACAACTTCACTCTTT
CTCCAAAATGTTGGTGCAATTCCGTCCTCCCTCCAATTTGTTGGTGCAGCTCTACTCTATTTTCAAAATACTAGTGCAGCTTCGGTCTATCTCCAAAATGTTGTTGCAGC
TTCGCTCCATCTAAAAAATGTTGGTGCAGCTTCACTCAATCTTCAAAATACTAGTGCAACTTTACTTCACCTCCAAAATTCTAGTGCAGCTTTGCTCCATCTCCAAAATT
TTGCTTCACTCCATCTCAAAAATGGAGGTACAACTTCACACCATCTCCAAAATGTTGGTGCAGTTCTGCCTCCTTTCCAAAATGTCGGTGCAATTCTGCCCCCCTCCAAT
TTGTTGGTGCAGCTTCGCTCCCTCTCTAAAATGTTGATACAATTTTACTCCATCTTCAAGTACAAGATTGGTGTGCCTGGTTTCGCTCCACTCCATCTTCACAAACAAGA
TCTGTGTGTCCCGCTTTTCTCCATCTTCAGGGTCAAGATCGCTCAGCCTAGCTCCACGTCATCTGCAAGATCAAGTTTGATCTTCCTAGCTCTGTCTCACCTGCAAAATC
AAGTTCGGTCCGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGGCAATCAACATGAAAGAAAGATGAAAATTTTGAAAGCAAAATCATTTCATGAACAAAATAACGACGAGAAGATTCACAGTCGTGTCCCTTCACGCAAGAAGAG
GAAGTTGTCTGTTGACATAAATATAGAAGGTTCATTGACGGTGAAGCCAAAACTCATCATATTAACGAATCCTACAGATGAAGAGATCAAGCCCGCTCCATCTCTAAATG
TTGGTGTAGCTTCACTCCATCTCCAATATGGAGGTGCAACTTCATGCCATCTCCAAAATCTTGGTGCAACTCTGCCTCCTCTCCAAAATGTTGGTACAACTTCACTCTTT
CTCCAAAATGTTGGTGCAATTCCGTCCTCCCTCCAATTTGTTGGTGCAGCTCTACTCTATTTTCAAAATACTAGTGCAGCTTCGGTCTATCTCCAAAATGTTGTTGCAGC
TTCGCTCCATCTAAAAAATGTTGGTGCAGCTTCACTCAATCTTCAAAATACTAGTGCAACTTTACTTCACCTCCAAAATTCTAGTGCAGCTTTGCTCCATCTCCAAAATT
TTGCTTCACTCCATCTCAAAAATGGAGGTACAACTTCACACCATCTCCAAAATGTTGGTGCAGTTCTGCCTCCTTTCCAAAATGTCGGTGCAATTCTGCCCCCCTCCAAT
TTGTTGGTGCAGCTTCGCTCCCTCTCTAAAATGTTGATACAATTTTACTCCATCTTCAAGTACAAGATTGGTGTGCCTGGTTTCGCTCCACTCCATCTTCACAAACAAGA
TCTGTGTGTCCCGCTTTTCTCCATCTTCAGGGTCAAGATCGCTCAGCCTAGCTCCACGTCATCTGCAAGATCAAGTTTGATCTTCCTAGCTCTGTCTCACCTGCAAAATC
AAGTTCGGTCCGCCTAG
Protein sequenceShow/hide protein sequence
MTGNQHERKMKILKAKSFHEQNNDEKIHSRVPSRKKRKLSVDINIEGSLTVKPKLIILTNPTDEEIKPAPSLNVGVASLHLQYGGATSCHLQNLGATLPPLQNVGTTSLF
LQNVGAIPSSLQFVGAALLYFQNTSAASVYLQNVVAASLHLKNVGAASLNLQNTSATLLHLQNSSAALLHLQNFASLHLKNGGTTSHHLQNVGAVLPPFQNVGAILPPSN
LLVQLRSLSKMLIQFYSIFKYKIGVPGFAPLHLHKQDLCVPLFSIFRVKIAQPSSTSSARSSLIFLALSHLQNQVRSA