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CaUC08G154190 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC08G154190
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionpentatricopeptide repeat-containing protein At1g25360-like
Genome locationCiama_Chr08:25894654..25895672
RNA-Seq ExpressionCaUC08G154190
SyntenyCaUC08G154190
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585558.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]7.7e-1170.59Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        MI  GFKP GHLV+RL D+ WKS +LV+ARQLFDEI +P+AV RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
KAG7020472.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]7.7e-1170.59Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        MI  GFKP GHLV+RL D+ WKS +LV+ARQLFDEI +P+AV RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
XP_022144208.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia]9.1e-1274.51Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        MIA GFKP GHLV+RL D+ WKS +LVYARQLFDEI +P+AV RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
XP_022951057.1 pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita moschata]2.0e-1172.55Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        MI  GFKP GHLV+RL D+ WKS +LVYARQLFDEI +P+AV RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
XP_023537093.1 pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita pepo subsp. pepo]2.0e-1172.55Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        MI  GFKP GHLV+RL D+ WKS +LVYARQLFDEI +P+AV RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
TrEMBL top hitse value%identityAlignment
A0A1S4DVG9 pentatricopeptide repeat-containing protein At1g25360-like1.2e-0964.71Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        +IA GFK  GH+V+RL D+ WKS D VYARQLFDEI  P+ + RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
A0A5A7VDN1 Pentatricopeptide repeat-containing protein1.2e-0964.71Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        +IA GFK  GH+V+RL D+ WKS D VYARQLFDEI  P+ + RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
A0A6J1CRF6 pentatricopeptide repeat-containing protein At1g25360-like4.4e-1274.51Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        MIA GFKP GHLV+RL D+ WKS +LVYARQLFDEI +P+AV RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
A0A6J1GGL5 pentatricopeptide repeat-containing protein At1g25360-like9.8e-1272.55Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        MI  GFKP GHLV+RL D+ WKS +LVYARQLFDEI +P+AV RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
A0A6J1KSZ4 pentatricopeptide repeat-containing protein At1g25360-like1.4e-1070.59Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        MI  GFK  GHLV+RL D+ WKS +LVYARQLFDEI +P+AV RTTLI AY
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
SwissProt top hitse value%identityAlignment
Q9FRI5 Pentatricopeptide repeat-containing protein At1g253603.4e-0949.02Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        +I +GF+P  H+++RL D+  KS +L YARQLFDEI++P+ + RTT+++ Y
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
Arabidopsis top hitse value%identityAlignment
AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein2.4e-1049.02Show/hide
Query:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY
        +I +GF+P  H+++RL D+  KS +L YARQLFDEI++P+ + RTT+++ Y
Subjt:  MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGCTTGGGGATTCAAGCCTCATGGACACCTTGTCGATCGCCTACACGATTTGTGCTGGAAATCGTTCGATCTTGTGTATGCCCGCCAACTGTTCGACGAAATTAC
TGACCCAGAGGCTGTAGTGAGGACGACGTTGATTGCGGCATACTATTATCTCCAACGCAGTGATTACTGGATATGTTGCAGCGTGGCCAAATGCATGTGTCCGTTTGAAA
AGAATGATGATCTGAACGAAGCACGTGGCCTTCTCGACACAATGACTGAAAAGCTGGGGTTAGTATGGGGATCTTTGGACATGTGCATTGTGGTCTTTTCGAGGATGCCT
CGAACACTCTTTATAGAAATGCGTTTGATTGGAGTCCCACCACTACGACTTCACCTATACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGCTTGGGGATTCAAGCCTCATGGACACCTTGTCGATCGCCTACACGATTTGTGCTGGAAATCGTTCGATCTTGTGTATGCCCGCCAACTGTTCGACGAAATTAC
TGACCCAGAGGCTGTAGTGAGGACGACGTTGATTGCGGCATACTATTATCTCCAACGCAGTGATTACTGGATATGTTGCAGCGTGGCCAAATGCATGTGTCCGTTTGAAA
AGAATGATGATCTGAACGAAGCACGTGGCCTTCTCGACACAATGACTGAAAAGCTGGGGTTAGTATGGGGATCTTTGGACATGTGCATTGTGGTCTTTTCGAGGATGCCT
CGAACACTCTTTATAGAAATGCGTTTGATTGGAGTCCCACCACTACGACTTCACCTATACTAG
Protein sequenceShow/hide protein sequence
MIAWGFKPHGHLVDRLHDLCWKSFDLVYARQLFDEITDPEAVVRTTLIAAYYYLQRSDYWICCSVAKCMCPFEKNDDLNEARGLLDTMTEKLGLVWGSLDMCIVVFSRMP
RTLFIEMRLIGVPPLRLHLY