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CaUC09G159600 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC09G159600
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionprotein CURVATURE THYLAKOID 1C, chloroplastic
Genome locationCiama_Chr09:1856552..1860058
RNA-Seq ExpressionCaUC09G159600
SyntenyCaUC09G159600
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR025564 - Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain
IPR033344 - Protein CURVATURE THYLAKOID 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059311.1 protein CURVATURE THYLAKOID 1C [Cucumis melo var. makuwa]1.7e-5985.03Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI ATLP  PPLL PRK FT+LN SQKL+V   +    G+VVVKAVGGSSESSTSLDIIKSVRNVWDQPEDR AL GLGFAAVA AWTATNLVTAIDK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIGALVSWWFVYRYLLFKPNREELLQIINKSI+DVFGQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

XP_004141763.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucumis sativus]1.8e-6186.39Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI ATLP  PPLL PRK FT+LN SQKL+VF  +N  SG+VVVKAVGGSSESSTSLDI+KSVRNVWDQPEDRLAL GLGFAAVA AWTATN+VTAIDK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIGALVSWWFVYRYLLFKPNREELLQIINKSI+DVFGQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

XP_008462170.1 PREDICTED: protein CURVATURE THYLAKOID 1C, chloroplastic [Cucumis melo]8.6e-5984.35Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI ATLP  PPLL PRK FT+LN SQKL+V   +    G+VVVKAVGGSSESSTSLDIIKSVRNVWDQPEDR AL GLGFAAVA AWTATNLV AIDK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIGALVSWWFVYRYLLFKPNREELLQIINKSI+DVFGQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

XP_022144822.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Momordica charantia]8.9e-5681.63Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI A+LP  PPLL P K FTLLNTSQKLTVFPI+ + S +VVVKA G SS+SS SL IIKSV+N+WDQPEDRL L GLGFAAVAA WTATN VTAIDK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIGALVSWWFVYRYLLFKPNREELLQIINKSI DV GQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

XP_038897597.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida]6.1e-6590.48Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI ATLP  PPLL PRK FTLLNTSQKLT FPI+NR SG+VVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLAL GLGFAAVA  WTATNLVTAIDK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIGALVSWWFVYRYLLFKPNREELLQIINKSI+DVFGQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

TrEMBL top hitse value%identityAlignment
A0A0A0KC66 CAAD domain-containing protein9.0e-6286.39Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI ATLP  PPLL PRK FT+LN SQKL+VF  +N  SG+VVVKAVGGSSESSTSLDI+KSVRNVWDQPEDRLAL GLGFAAVA AWTATN+VTAIDK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIGALVSWWFVYRYLLFKPNREELLQIINKSI+DVFGQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

A0A1S3CHU0 protein CURVATURE THYLAKOID 1C, chloroplastic4.2e-5984.35Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI ATLP  PPLL PRK FT+LN SQKL+V   +    G+VVVKAVGGSSESSTSLDIIKSVRNVWDQPEDR AL GLGFAAVA AWTATNLV AIDK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIGALVSWWFVYRYLLFKPNREELLQIINKSI+DVFGQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

A0A5D3BWY3 Protein CURVATURE THYLAKOID 1C8.4e-6085.03Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI ATLP  PPLL PRK FT+LN SQKL+V   +    G+VVVKAVGGSSESSTSLDIIKSVRNVWDQPEDR AL GLGFAAVA AWTATNLVTAIDK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIGALVSWWFVYRYLLFKPNREELLQIINKSI+DVFGQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

A0A6J1CUT1 protein CURVATURE THYLAKOID 1C, chloroplastic4.3e-5681.63Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI A+LP  PPLL P K FTLLNTSQKLTVFPI+ + S +VVVKA G SS+SS SL IIKSV+N+WDQPEDRL L GLGFAAVAA WTATN VTAIDK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIGALVSWWFVYRYLLFKPNREELLQIINKSI DV GQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

A0A6J1KFS9 protein CURVATURE THYLAKOID 1C, chloroplastic1.1e-5478.23Show/hide
Query:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK
        MASI ATLP  PPLL P K F  L T QK+TVFPI+   S + +VKA+G SSESSTS+DIIKSVRNVWDQPEDRL L GLGFAAV  AWTATNLVTA+DK
Subjt:  MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDK

Query:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        LPLLPG LEFIG LVSWWFVYRYLLFKPNREELLQIINKS+ DV GQ
Subjt:  LPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

SwissProt top hitse value%identityAlignment
O04616 Protein CURVATURE THYLAKOID 1A, chloroplastic5.3e-1134.07Show/hide
Query:  ATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLD---IIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLP
        + +P  PP    R  FT+     KL    +S      V +     SSE ++S+D   +I  ++  WD  E++  ++  G  A+ A W ++ +V AI+ +P
Subjt:  ATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLD---IIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLP

Query:  LLPGALEFIGALVSWWFVYRYLLFKPNREELLQII
        LLP  +E +G   + WFVYRYLLFK +R+EL + I
Subjt:  LLPGALEFIGALVSWWFVYRYLLFKPNREELLQII

Q119Z5 Glutamate--tRNA ligase7.4e-0527.59Show/hide
Query:  ATLPPAPPLLT-PRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSL--DIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLP
        AT P A    T  +K+ T + TS      P+    + +V V+      E   ++  +    +  ++ Q + +L L G     +        ++ A+D +P
Subjt:  ATLPPAPPLLT-PRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSL--DIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLP

Query:  LLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        +L    E IG +   WFVYRYLL + NR+ELL  I     ++FG+
Subjt:  LLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

Q8LCA1 Protein CURVATURE THYLAKOID 1B, chloroplastic5.5e-1636.84Show/hide
Query:  SESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFG
        +E++   +I+K+ +  W++ +D+ A+  L FA V A W +  +++AID+LPL+PG LE +G   + WF Y+ L+FKP+RE L + +  +  D+ G
Subjt:  SESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFG

Q8LDD3 Protein CURVATURE THYLAKOID 1D, chloroplastic2.3e-0625.6Show/hide
Query:  TSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLD----IIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLPLLPGALEFIGALVSWWFVY
        TS  +  F + +R    V  +    +SE+  + D     ++ + ++    +   +++  G  A+ A +  + +V++++ +PL P  +E +G   + WF  
Subjt:  TSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLD----IIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLPLLPGALEFIGALVSWWFVY

Query:  RYLLFKPNREELLQIINKSIVDVFG
        RYLLFK NREEL   +++    V G
Subjt:  RYLLFKPNREELLQIINKSIVDVFG

Q9M812 Protein CURVATURE THYLAKOID 1C, chloroplastic5.3e-3550.96Show/hide
Query:  MASIAATLPPAPPLLTPRKI---------FTLLNTSQKLTVFPIS-NRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWT
        MASI+ATL P+P LLT RK          F+L   +  L+   ++ N  S S++VKA G SS+SST LD++ +++NVWD+ EDRL LIGLGFA + A W 
Subjt:  MASIAATLPPAPPLLTPRKI---------FTLLNTSQKLTVFPIS-NRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWT

Query:  ATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        + NL+TAIDKLP++    E +G L S WF YRYLLFKP+R+EL +I+ KS+ D+ GQ
Subjt:  ATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

Arabidopsis top hitse value%identityAlignment
AT1G52220.1 FUNCTIONS IN: molecular_function unknown3.7e-3650.96Show/hide
Query:  MASIAATLPPAPPLLTPRKI---------FTLLNTSQKLTVFPIS-NRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWT
        MASI+ATL P+P LLT RK          F+L   +  L+   ++ N  S S++VKA G SS+SST LD++ +++NVWD+ EDRL LIGLGFA + A W 
Subjt:  MASIAATLPPAPPLLTPRKI---------FTLLNTSQKLTVFPIS-NRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWT

Query:  ATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        + NL+TAIDKLP++    E +G L S WF YRYLLFKP+R+EL +I+ KS+ D+ GQ
Subjt:  ATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

AT1G52220.2 FUNCTIONS IN: molecular_function unknown2.7e-3450.32Show/hide
Query:  MASIAATLPPAPPLLTPRKI---------FTLLNTSQKLTVFPIS-NRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWT
        MASI+ATL P+P LLT RK          F+L   +  L+   ++ N  S S++VKA G SS+SST LD++ +++N WD+ EDRL LIGLGFA + A W 
Subjt:  MASIAATLPPAPPLLTPRKI---------FTLLNTSQKLTVFPIS-NRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWT

Query:  ATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
        + NL+TAIDKLP++    E +G L S WF YRYLLFKP+R+EL +I+ KS+ D+ GQ
Subjt:  ATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

AT1G52220.3 FUNCTIONS IN: molecular_function unknown2.4e-1939.49Show/hide
Query:  MASIAATLPPAPPLLTPRKI---------FTLLNTSQKLTVFPIS-NRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWT
        MASI+ATL P+P LLT RK          F+L   +  L+   ++ N  S S++VKA G SS+SST LD++ +++NV                       
Subjt:  MASIAATLPPAPPLLTPRKI---------FTLLNTSQKLTVFPIS-NRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWT

Query:  ATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ
              AIDKLP++    E +G L S WF YRYLLFKP+R+EL +I+ KS+ D+ GQ
Subjt:  ATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ

AT2G46820.1 photosystem I P subunit3.9e-1736.84Show/hide
Query:  SESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFG
        +E++   +I+K+ +  W++ +D+ A+  L FA V A W +  +++AID+LPL+PG LE +G   + WF Y+ L+FKP+RE L + +  +  D+ G
Subjt:  SESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFG

AT2G46820.2 photosystem I P subunit3.9e-1736.84Show/hide
Query:  SESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFG
        +E++   +I+K+ +  W++ +D+ A+  L FA V A W +  +++AID+LPL+PG LE +G   + WF Y+ L+FKP+RE L + +  +  D+ G
Subjt:  SESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLPLLPGALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTGCTGCTACTCTACCTCCGGCTCCGCCATTGTTGACACCTCGCAAAATCTTTACCCTTCTGAACACTTCTCAGAAGCTCACTGTCTTCCCCATT
TCAAACAGACATTCTGGCAGTGTTGTTGTAAAGGCTGTCGGAGGGAGCTCTGAGTCTTCTACTTCCCTCGATATTATTAAGTCTGTTCGAAATGTTTGGGATCAG
CCTGAAGATCGACTGGCGCTTATCGGCCTGGGATTTGCAGCTGTAGCAGCTGCATGGACAGCAACAAATCTTGTTACGGCCATTGATAAGCTACCACTACTTCCA
GGTGCATTAGAATTCATAGGAGCACTGGTTTCTTGGTGGTTCGTGTATCGCTACCTCCTGTTCAAGCCAAACCGGGAAGAGCTTCTGCAGATAATCAACAAGTCA
ATAGTTGATGTATTTGGACAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATTGCTGCTACTCTACCTCCGGCTCCGCCATTGTTGACACCTCGCAAAATCTTTACCCTTCTGAACACTTCTCAGAAGCTCACTGTCTTCCCCATT
TCAAACAGACATTCTGGCAGTGTTGTTGTAAAGGCTGTCGGAGGGAGCTCTGAGTCTTCTACTTCCCTCGATATTATTAAGTCTGTTCGAAATGTTTGGGATCAG
CCTGAAGATCGACTGGCGCTTATCGGCCTGGGATTTGCAGCTGTAGCAGCTGCATGGACAGCAACAAATCTTGTTACGGCCATTGATAAGCTACCACTACTTCCA
GGTGCATTAGAATTCATAGGAGCACTGGTTTCTTGGTGGTTCGTGTATCGCTACCTCCTGTTCAAGCCAAACCGGGAAGAGCTTCTGCAGATAATCAACAAGTCA
ATAGTTGATGTATTTGGACAGTAA
Protein sequenceShow/hide protein sequence
MASIAATLPPAPPLLTPRKIFTLLNTSQKLTVFPISNRHSGSVVVKAVGGSSESSTSLDIIKSVRNVWDQPEDRLALIGLGFAAVAAAWTATNLVTAIDKLPLLP
GALEFIGALVSWWFVYRYLLFKPNREELLQIINKSIVDVFGQ