; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC09G165190 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC09G165190
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPSII 6.1 kDa protein
Genome locationCiama_Chr09:7140679..7141706
RNA-Seq ExpressionCaUC09G165190
SyntenyCaUC09G165190
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016757 - transferase activity, transferring glycosyl groups (molecular function)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]2.8e-5892.81Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRP-LPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAVTSAAAAAVRTSLV NRP LP+ASPAPFLLGLPALGKKGGV+CSMEGKG NGEV +K +NL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSAAAAAVRTSLVHNRP-LPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]2.8e-5892.03Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSLV NR LP+ASPAPFLLGLPALGKKGGV+CSMEGKG NGEV +K +NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]3.3e-5993.53Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRP-LPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAVTSAAAAAVRTSLV NRP LP+ASPAPFLLGLPALGKKGGV+CSMEGKG NGEV +K +NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSAAAAAVRTSLVHNRP-LPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_031745255.1 photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus]4.5e-5686.99Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLL--------GLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLST
        MAAVTSAAAA VRTSLV NR LP+ASPAPFLL        GLPALGKKGGV+CSMEGKG NGEV +K +NLGMGASLIAAACAATMSSPAMALVDERLST
Subjt:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLL--------GLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLST

Query:  EGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        EGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  EGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]4.4e-5992.03Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAA A  RTSLV NRPLPAASPAPFLLGLPALGKKGGV+CSMEGKG NGEV +K +NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein1.4e-5892.03Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VRTSLV NR LP+ASPAPFLLGLPALGKKGGV+CSMEGKG NGEV +K +NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein1.6e-5993.53Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRP-LPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAVTSAAAAAVRTSLV NRP LP+ASPAPFLLGLPALGKKGGV+CSMEGKG NGEV +K +NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSAAAAAVRTSLVHNRP-LPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein1.4e-5892.81Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRP-LPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAVTSAAAAAVRTSLV NRP LP+ASPAPFLLGLPALGKKGGV+CSMEGKG NGEV +K +NL MGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVTSAAAAAVRTSLVHNRP-LPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein8.3e-5686.96Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVTSAAAA VR+SLV NRPLPAASP+PFLLGLPALGKKGGV+CSMEGK  NG+V +K + LGMGASL+AAA AA+MSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein1.2e-5486.23Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAV SA+AAAVR+SLV NRPLPAASP  FLLGLPALGK+GGV+C ++GK  NGEV +K  NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFG IW FYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.2e-3260.56Show/hide
Query:  MAAVTSAAA--AAVRTSLVHNRPLPAASPAPFLLGLPALG-KKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTG
        MA+ T++A+  +A R +L+    +  ++P   +LGLP +G KKGGV+CSME K  N  V      +G G S  A AA  A MS+PAMALVDER+STEGTG
Subjt:  MAAVTSAAA--AAVRTSLVHNRPLPAASPAPFLLGLPALG-KKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTG

Query:  LPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LPFGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  LPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic1.8e-3662.14Show/hide
Query:  MAAVTSAAAAAV--RTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP
        MA +T++++A++  R SLVHN  +  +S    +LGLP++ K+  V CS+E K +  E  +  N   MGASL+AAA AAT+S+PAMALVDER+STEGTGLP
Subjt:  MAAVTSAAAAAV--RTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFGLIWA Y VY S LEEDEESGLSL
Subjt:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic1.2e-2251.82Show/hide
Query:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGG--VKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP
        MA V++AAA +V    V   P          LGLP +  +    V+C+   +        K    G GASL+A A  A   +PAMALVDER+STEGTGL 
Subjt:  MAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGG--VKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESG
         GLSNNLLGWILLGVFGLIW+ Y +YTS LEEDEESG
Subjt:  FGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic5.1e-1043.84Show/hide
Query:  SLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL
        ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +WA + +    L   ED + GL L
Subjt:  SLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W8.8e-3460.56Show/hide
Query:  MAAVTSAAA--AAVRTSLVHNRPLPAASPAPFLLGLPALG-KKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTG
        MA+ T++A+  +A R +L+    +  ++P   +LGLP +G KKGGV+CSME K  N  V      +G G S  A AA  A MS+PAMALVDER+STEGTG
Subjt:  MAAVTSAAA--AAVRTSLVHNRPLPAASPAPFLLGLPALG-KKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTG

Query:  LPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL
        LPFGLSNNLLGWIL GVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  LPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGACACGTGTATAAACCCAATTGGTCAAAAGTAGATAGAGGATATGAAGGAAATGAAGTTCAAGAGCAAATAAATCAAATGGCCGCCGTCACCTCCGCCGCCGC
TGCCGCCGTGCGCACTTCTCTAGTGCATAACCGCCCACTGCCGGCGGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTGCCTTGGGAAAGAAAGGAGGAGTGAAGTGTT
CAATGGAAGGAAAGGGAAATAATGGAGAAGTAGTAAGCAAGTTGAACAACTTGGGGATGGGGGCGTCATTGATAGCTGCGGCATGTGCTGCGACGATGTCGAGCCCGGCC
ATGGCTTTGGTGGATGAGAGACTGAGTACTGAAGGAACTGGCCTTCCATTTGGTTTAAGCAACAATCTTCTTGGTTGGATTCTCTTGGGGGTTTTTGGTCTCATTTGGGC
ATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAGTCTGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGACACGTGTATAAACCCAATTGGTCAAAAGTAGATAGAGGATATGAAGGAAATGAAGTTCAAGAGCAAATAAATCAAATGGCCGCCGTCACCTCCGCCGCCGC
TGCCGCCGTGCGCACTTCTCTAGTGCATAACCGCCCACTGCCGGCGGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTGCCTTGGGAAAGAAAGGAGGAGTGAAGTGTT
CAATGGAAGGAAAGGGAAATAATGGAGAAGTAGTAAGCAAGTTGAACAACTTGGGGATGGGGGCGTCATTGATAGCTGCGGCATGTGCTGCGACGATGTCGAGCCCGGCC
ATGGCTTTGGTGGATGAGAGACTGAGTACTGAAGGAACTGGCCTTCCATTTGGTTTAAGCAACAATCTTCTTGGTTGGATTCTCTTGGGGGTTTTTGGTCTCATTTGGGC
ATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAGTCTGGCTTATCTCTTTAA
Protein sequenceShow/hide protein sequence
MIGHVYKPNWSKVDRGYEGNEVQEQINQMAAVTSAAAAAVRTSLVHNRPLPAASPAPFLLGLPALGKKGGVKCSMEGKGNNGEVVSKLNNLGMGASLIAAACAATMSSPA
MALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL