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CaUC09G169090 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC09G169090
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Genome locationCiama_Chr09:12050776..12052379
RNA-Seq ExpressionCaUC09G169090
SyntenyCaUC09G169090
Gene Ontology termsGO:0042773 - ATP synthesis coupled electron transport (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
GO:0048038 - quinone binding (molecular function)
InterPro domainsIPR001750 - NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PSR18241.1 NADH-quinone oxidoreductase subunit L [filamentous cyanobacterium CCP3]1.1e-1170.91Show/hide
Query:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        P S+   F+++V    V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA +FL
Subjt:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

WP_017299734.1 NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea nodulosa]8.5e-1272.73Show/hide
Query:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        P SI   F+++V    V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA +FL
Subjt:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

WP_190753673.1 NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea sp. FACHB-131]1.1e-1170.91Show/hide
Query:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        P S+   F+++V    V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA +FL
Subjt:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

WP_194026720.1 NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea sp. LEGE 07298]8.5e-1272.73Show/hide
Query:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        P SI   F+++V    V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA +FL
Subjt:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

WP_194055775.1 NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea sp. LEGE 06152]8.5e-1272.73Show/hide
Query:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        P SI   F+++V    V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA +FL
Subjt:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

TrEMBL top hitse value%identityAlignment
A0A1U7J454 NADH-quinone oxidoreductase subunit L5.4e-1270.91Show/hide
Query:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        P S+   F+++V    V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA +FL
Subjt:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

A0A291EZI7 NAD(P)H dehydrogenase subunit 55.4e-1259.72Show/hide
Query:  SFACRSHAESLSPILHCPTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        SF CR   +  + +++    +  C +++V + AV+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA IFL
Subjt:  SFACRSHAESLSPILHCPTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

A0A2P8W1A7 NADH-quinone oxidoreductase subunit L5.4e-1270.91Show/hide
Query:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        P S+   F+++V    V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA +FL
Subjt:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

A0A2T2W846 NADH-quinone oxidoreductase subunit L5.4e-1270.91Show/hide
Query:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        P S+   F+++V    V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA +FL
Subjt:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

A0A2W6ZUJ3 NADH-quinone oxidoreductase subunit L5.4e-1270.91Show/hide
Query:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        P S+   F+++V    V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA +FL
Subjt:  PTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

SwissProt top hitse value%identityAlignment
A0ZZ82 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic9.4e-1483.67Show/hide
Query:  CFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        C SL+ A  AV+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA IFL
Subjt:  CFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

A4GGE3 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic7.2e-1479.17Show/hide
Query:  FSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        F+L++   +V+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA IFL
Subjt:  FSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

Q06GU9 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic9.4e-1483.67Show/hide
Query:  CFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        C SL+ A  AV+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA IFL
Subjt:  CFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

Q06R83 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic7.2e-1483.67Show/hide
Query:  CFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        C SL+  T AV+KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA IFL
Subjt:  CFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

Q32126 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic4.2e-1480.85Show/hide
Query:  SLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        +L++ T A++KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA IFL
Subjt:  SLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

Arabidopsis top hitse value%identityAlignment
ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein9.7e-1489.74Show/hide
Query:  VSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        ++KSAQFPLHVWLPDAMEGPTPI ALIHAATMVAA IFL
Subjt:  VSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

ATMG00060.1 NADH dehydrogenase subunit 5C4.2e-0958.7Show/hide
Query:  LVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        +++   AV KSAQ   H W PDAMEGPTP+ A IHAATMV A +F+
Subjt:  LVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

ATMG00513.1 NADH dehydrogenase 5A4.2e-0958.7Show/hide
Query:  LVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        +++   AV KSAQ   H W PDAMEGPTP+ A IHAATMV A +F+
Subjt:  LVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL

ATMG00665.1 NADH dehydrogenase 5B4.2e-0958.7Show/hide
Query:  LVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL
        +++   AV KSAQ   H W PDAMEGPTP+ A IHAATMV A +F+
Subjt:  LVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGCACTTGAGCGTTTGACGTCCGTCGCCCCTCTACCGTCGTTCGCGTGTAGGAGTCACGCCGAATCTCTCTCTCCCATTTTGCATTGTCCGACATCCATTCGTCA
CTGCTTTTCGCTGGTCGTTGCCACTAGTGCAGTTTCTAAATCTGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTTAGCTCTTA
TACATGCTGCTACGATGGTAGCAGCGAGAATTTTCTTACAAAATTACGCATGCATAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGCACTTGAGCGTTTGACGTCCGTCGCCCCTCTACCGTCGTTCGCGTGTAGGAGTCACGCCGAATCTCTCTCTCCCATTTTGCATTGTCCGACATCCATTCGTCA
CTGCTTTTCGCTGGTCGTTGCCACTAGTGCAGTTTCTAAATCTGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTTAGCTCTTA
TACATGCTGCTACGATGGTAGCAGCGAGAATTTTCTTACAAAATTACGCATGCATAGAGTAG
Protein sequenceShow/hide protein sequence
MPALERLTSVAPLPSFACRSHAESLSPILHCPTSIRHCFSLVVATSAVSKSAQFPLHVWLPDAMEGPTPILALIHAATMVAARIFLQNYACIE