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CaUC09G169140 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC09G169140
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCiama_Chr09:12097680..12098857
RNA-Seq ExpressionCaUC09G169140
SyntenyCaUC09G169140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OAY84314.1 Pentatricopeptide repeat-containing protein [Ananas comosus]9.8e-0551.56Show/hide
Query:  KKRPEQKTALLLSKAATTAAVIAADEPNPVFATSGLQ----VFPYDSSSLNVIDEKGGKEANDS
        +K  +++    +S AATT  VIAADEP+PV ATSGL     +FP  +S LNV++EKGG EA+ S
Subjt:  KKRPEQKTALLLSKAATTAAVIAADEPNPVFATSGLQ----VFPYDSSSLNVIDEKGGKEANDS
TrEMBL top hitse value%identityAlignment
A0A199W4S3 Pentatricopeptide repeat-containing protein4.7e-0551.56Show/hide
Query:  KKRPEQKTALLLSKAATTAAVIAADEPNPVFATSGLQ----VFPYDSSSLNVIDEKGGKEANDS
        +K  +++    +S AATT  VIAADEP+PV ATSGL     +FP  +S LNV++EKGG EA+ S
Subjt:  KKRPEQKTALLLSKAATTAAVIAADEPNPVFATSGLQ----VFPYDSSSLNVIDEKGGKEANDS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTAGAAAACAAAATAACCTTCTCATATTACAAGGACATATGCACCAAAAGTGATGAATTCATTTTATTGAAGTTCAGAATGCAGTATGACCAGACAACA
CATAAAGAGGGATGGCCCATGAAGAAGAGACCTGAGCAGAAGACAGCACTTCTGTTAAGTAAAGCAGCAACTACAGCAGCTGTCATTGCTGCAGATGAGCCCAAT
CCAGTTTTTGCAACTTCAGGCTTGCAAGTTTTCCCATATGATTCCTCATCATTGAATGTAATTGATGAAAAAGGAGGCAAGGAAGCCAATGATTCTGATGTTAGT
GGAAGTCCACGAGCCTCAATCTATGAAACAGACATTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTAGAAAACAAAATAACCTTCTCATATTACAAGGACATATGCACCAAAAGTGATGAATTCATTTTATTGAAGTTCAGAATGCAGTATGACCAGACAACA
CATAAAGAGGGATGGCCCATGAAGAAGAGACCTGAGCAGAAGACAGCACTTCTGTTAAGTAAAGCAGCAACTACAGCAGCTGTCATTGCTGCAGATGAGCCCAAT
CCAGTTTTTGCAACTTCAGGCTTGCAAGTTTTCCCATATGATTCCTCATCATTGAATGTAATTGATGAAAAAGGAGGCAAGGAAGCCAATGATTCTGATGTTAGT
GGAAGTCCACGAGCCTCAATCTATGAAACAGACATTGCATAA
Protein sequenceShow/hide protein sequence
MKVENKITFSYYKDICTKSDEFILLKFRMQYDQTTHKEGWPMKKRPEQKTALLLSKAATTAAVIAADEPNPVFATSGLQVFPYDSSSLNVIDEKGGKEANDSDVS
GSPRASIYETDIA