CuGenDBv2

Gene ID	CaUC09G169600
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Genome location	Ciama_Chr09:13267678..13268597
RNA-Seq Expression	CaUC09G169600
Synteny	CaUC09G169600
Gene Ontology terms	GO:0015990 - electron transport coupled proton transport (biological process) GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048039 - ubiquinone binding (molecular function)
InterPro domains	IPR003918 - NADH:ubiquinone oxidoreductase

Homology

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GenBank top hits

e value

%identity

Alignment

AES68444.1 NADH-ubiquinone/plastoquinone (complex I) protein [Medicago truncatula]

5.5e-15

67.19

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLYDLQYL
        ++GIGSISD GLNG +LQIISHGFIG  LFFLAGTSYD++R +YLDE   I PN+K + DL++L
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLYDLQYL

QLI53753.1 NADH dehydrogenase subunit 4 [Schefflera digitata]

1.2e-14

91.67

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI
        L+GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI

YP_009473667.1 NdhD [Impatiens piufanensis]

9.5e-15

77.97

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLY
        ++GIGSI+DTGLNGAILQIISHGFIGT LFFLAGTSYDRIRL YLDE   IA   KK++
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLY

YP_009669617.1 NADH dehydrogenase subunit D [Oxalis drummondii]

1.2e-14

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL
        ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+   + K+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL

YP_009973537.1 NADH-plastoquinone oxidoreductase subunit 4 [Oxalis corniculata]

1.2e-14

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL
        ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+   + K+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL

TrEMBL top hits

e value

%identity

Alignment

A0A2P1BYE3 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

4.6e-15

77.97

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLY
        ++GIGSI+DTGLNGAILQIISHGFIGT LFFLAGTSYDRIRL YLDE   IA   KK++
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLY

A0A7D5YJV3 NADH dehydrogenase subunit 4

6.0e-15

91.67

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI
        L+GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI

A0A7G7YER8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

6.0e-15

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL
        ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+   + K+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL

D3WEQ7 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

6.0e-15

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL
        ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+   + K+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKL

G7IVM5 NADH-ubiquinone/plastoquinone (Complex I) protein

2.7e-15

67.19

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLYDLQYL
        ++GIGSISD GLNG +LQIISHGFIG  LFFLAGTSYD++R +YLDE   I PN+K + DL++L
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDE---IAPNSKKLYDLQYL

SwissProt top hits

e value

%identity

Alignment

Q0G9R2 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

4.7e-17

87.5

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI
        L+GIGSI+DTGLNGAILQI+SHGFIG  LFFLAGTSYDRIRLVYLDE+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI

Q49KU8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

6.2e-17

87.5

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI
        ++GIGSI+DTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI

Q4VZL8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

2.8e-17

89.58

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI
        ++GIGSISDTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI

Q68RV6 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

3.6e-17

89.58

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI
        L+GIGSI+DTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI

Q7YJT3 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic

3.6e-17

89.58

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI
        L+GIGSI+DTGLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI

Arabidopsis top hits

e value

%identity

Alignment

ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein

1.1e-16

83.33

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Query:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI
        ++GI SI+D GLNGAILQIISHGFIG  LFFLAGTSYDRIRLVYLDE+
Subjt:  LVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEI

Sequences

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CDS sequence

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ATGCAGTCTAGACAGATCCGCCGACGGTATTTGATTGATCTCGTGGGAATTGGTTCTATAAGCGATACGGGACTGAATGGAGCTATTTTACAAATAATCTCTCATGGATT
TATTGGCACTGTGCTTTTTTTCTTGGCGGGAACAAGTTATGATAGAATACGTCTGGTTTATCTCGATGAAATAGCCCCCAATTCCAAAAAGCTTTACGACTTACAATATC
TTATCGATGGCTTCCCTTGCATTGCC

mRNA sequence

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Protein sequence

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MQSRQIRRRYLIDLVGIGSISDTGLNGAILQIISHGFIGTVLFFLAGTSYDRIRLVYLDEIAPNSKKLYDLQYLIDGFPCIA

CaUC09G169600 (gene) of Watermelon (USVL246-FR2) v1 genome