; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CaUC09G169970 (gene) of Watermelon (USVL246-FR2) v1 genome

Gene IDCaUC09G169970
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionvacuolar protein sorting-associated protein 55 homolog
Genome locationCiama_Chr09:14594564..14598133
RNA-Seq ExpressionCaUC09G169970
SyntenyCaUC09G169970
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0005768 - endosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8055554.1 hypothetical protein FH972_012387 [Carpinus fangiana]5.8e-4873.64Show/hide
Query:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAV
        SCLH  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVL+PMPLLFFAGSDSSSLFSES ++W+NATKFLTGAS +GS+AIPAILKHA +IGWGA+
Subjt:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAV

Query:  ALDFSSLLAFVVAILCYLWMSNEEDYNIL
        A++FSS   FV+AI+CY+ M++E+DYN+L
Subjt:  ALDFSSLLAFVVAILCYLWMSNEEDYNIL

XP_004150170.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus]4.9e-4771.64Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PMPLLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI

XP_008448742.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo]6.4e-4771.64Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PMPLLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI

XP_022155500.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia]8.4e-4773.23Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +C  M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PMPLLFF GSDSSSL++ES+DSW+NATKFLTGAS +GSIAIP ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+A+D SS L FV+AILC+LWM+ ++D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

XP_022157395.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia]9.9e-5682.84Show/hide
Query:  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMI
        M DLG C HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+L+PMPLLFFAGSD+SSL SES DSW+NATKFLTGAS VGSIAIP ILKHA++I
Subjt:  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMI

Query:  GWGAVALDFSSLLAFVVAILCYLWMSNEEDYNIL
        GWGA+ALD SSLL FVVAILCYLWMSNE+DYN L
Subjt:  GWGAVALDFSSLLAFVVAILCYLWMSNEEDYNIL

TrEMBL top hitse value%identityAlignment
A0A0A0L5B3 Uncharacterized protein2.4e-4771.64Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PMPLLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI

A0A1S3BJT4 vacuolar protein sorting-associated protein 55 homolog3.1e-4771.64Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PMPLLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI

A0A5D3CIX3 Vacuolar protein sorting-associated protein 55-like protein3.1e-4771.64Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PMPLLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNI

A0A5N6R6S4 Uncharacterized protein2.8e-4873.64Show/hide
Query:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAV
        SCLH  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVL+PMPLLFFAGSDSSSLFSES ++W+NATKFLTGAS +GS+AIPAILKHA +IGWGA+
Subjt:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAV

Query:  ALDFSSLLAFVVAILCYLWMSNEEDYNIL
        A++FSS   FV+AI+CY+ M++E+DYN+L
Subjt:  ALDFSSLLAFVVAILCYLWMSNEEDYNIL

A0A6J1DSZ0 vacuolar protein sorting-associated protein 55 homolog4.8e-5682.84Show/hide
Query:  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMI
        M DLG C HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+L+PMPLLFFAGSD+SSL SES DSW+NATKFLTGAS VGSIAIP ILKHA++I
Subjt:  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMI

Query:  GWGAVALDFSSLLAFVVAILCYLWMSNEEDYNIL
        GWGA+ALD SSLL FVVAILCYLWMSNE+DYN L
Subjt:  GWGAVALDFSSLLAFVVAILCYLWMSNEEDYNIL

SwissProt top hitse value%identityAlignment
P47111 Vacuolar protein sorting-associated protein 552.1e-0828.57Show/hide
Query:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMP-LLFFAGS--DSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAVA
        ++K+++L   ++ G +L  L+CAL++N++PL  +++++L P+P  +F AG+   +S   S+SS++  +   FLTG      IA+P +  H  +IG  +  
Subjt:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMP-LLFFAGS--DSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAVA

Query:  LDFSSLLAFVVAILCYLWMSNEEDYN
        +     L    +I+ + W   ++D+N
Subjt:  LDFSSLLAFVVAILCYLWMSNEEDYN

Q54VP1 Vacuolar protein sorting-associated protein 55 homolog6.7e-0730.97Show/hide
Query:  GIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCY
        G++   LAC + ++ +P++ V  Y L P P +     DS   FS    ++ +   FLTG       AIP IL H+D+I   A+A   +  +     I+ +
Subjt:  GIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCY

Query:  LWM---SNEEDYN
        LW     N+ED N
Subjt:  LWM---SNEEDYN

Q9AST6 Vacuolar protein sorting-associated protein 55 homolog3.1e-4469.29Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PMPLLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

Q9UUH1 Vacuolar protein sorting-associated protein 556.1e-0828Show/hide
Query:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMP-LLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAVALD
        + K++ L  +++ G +L  L+CAL+ NW+PLL V+ ++L P+P LL    S S     E   + L+  +F  GA+     A+P +  +  +IG  A  + 
Subjt:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMP-LLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWGAVALD

Query:  F--SSLLAFVVAILCYLWMSNEEDY
            S++  V+ +    ++ +EE++
Subjt:  F--SSLLAFVVAILCYLWMSNEEDY

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein2.2e-4569.29Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PMPLLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein2.2e-4569.29Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PMPLLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein2.2e-4569.29Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PMPLLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

AT1G32410.4 Vacuolar protein sorting 55 (VPS55) family protein2.2e-4569.29Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PMPLLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

AT1G32410.5 Vacuolar protein sorting 55 (VPS55) family protein2.2e-4569.29Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PMPLLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTGAAGCGACTCGCTCCAACTCTTCCCAATCCGCCGCTGAGCTCCTTCAATCCCGTTTTCTCAGTGAGAAGGATTACCTGATGACAGACTTGGGAAGC
TGCTTGCACATGAGCAAAGTTGTAACATTAGGAATCTTGGTTTCTGGAGGAATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTG
AGTGTGGTTATGTATGTTCTTATCCCAATGCCTTTGCTGTTTTTTGCTGGCTCTGATAGTTCTTCACTATTTTCCGAATCGAGTGACAGTTGGCTGAATGCGACA
AAATTTTTAACGGGGGCTTCGGCAGTTGGAAGCATTGCCATACCTGCAATTTTGAAGCATGCTGACATGATAGGTTGGGGAGCAGTTGCACTGGACTTCTCTTCC
CTTTTAGCTTTTGTGGTGGCCATTTTATGTTATCTATGGATGAGTAATGAAGAAGACTACAATATACTCTAA
mRNA sequenceShow/hide mRNA sequence
GTTGAAAGTGAAACATTTCCTAATCGAAATTACAGGCTGAGCTAAGGGATAGTTTGAAGCAAACAGATGAAAGTTGAAGCGACTCGCTCCAACTCTTCCCAATCC
GCCGCTGAGCTCCTTCAATCCCGTTTTCTCAGTGAGAAGGATTACCTGATGACAGACTTGGGAAGCTGCTTGCACATGAGCAAAGTTGTAACATTAGGAATCTTG
GTTTCTGGAGGAATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGTGGTTATGTATGTTCTTATCCCAATGCCTTTGCTG
TTTTTTGCTGGCTCTGATAGTTCTTCACTATTTTCCGAATCGAGTGACAGTTGGCTGAATGCGACAAAATTTTTAACGGGGGCTTCGGCAGTTGGAAGCATTGCC
ATACCTGCAATTTTGAAGCATGCTGACATGATAGGTTGGGGAGCAGTTGCACTGGACTTCTCTTCCCTTTTAGCTTTTGTGGTGGCCATTTTATGTTATCTATGG
ATGAGTAATGAAGAAGACTACAATATACTCTAAGATGTGTGTTTCATGAAGTACTCGTGCGGAAGAAATCATTTTCCTCGAGGTCCATTCTCGTAAGCGAACTGA
AGCAAGCTATCTAGATTCGACTCAGCGCTATTATACATCCATTTAAAAGTTTTTCTTGAGTTTCTCTATATCAACAAACAATCCAATAGTAATGATTTGAAGCAC
CATTTTTTTACACTATTACAGAAACCAATTGCATGGATATGTAAAATATAGGAATGTTGAAAGGGA
Protein sequenceShow/hide protein sequence
MKVEATRSNSSQSAAELLQSRFLSEKDYLMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMPLLFFAGSDSSSLFSESSDSWLNAT
KFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNIL