CuGenDBv2

Gene ID	CaUC09G170260
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Decapping nuclease
Genome location	Ciama_Chr09:15454583..15456743
RNA-Seq Expression	CaUC09G170260
Synteny	CaUC09G170260
Gene Ontology terms	GO:0016070 - RNA metabolic process (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0005634 - nucleus (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003723 - RNA binding (molecular function) GO:0004518 - nuclease activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR039039 - RAI1-like family

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0038515.1 decapping nuclease DXO-like protein [Cucumis melo var. makuwa]

2.5e-41

94.38

Show/hide

Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

XP_008465901.1 PREDICTED: decapping nuclease DXO homolog, chloroplastic isoform X1 [Cucumis melo]

2.5e-41

94.38

Show/hide

Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

XP_011652685.1 decapping nuclease DXO homolog, chloroplastic [Cucumis sativus]

2.5e-41

94.38

Show/hide

Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

XP_022157293.1 decapping nuclease DXO homolog, chloroplastic [Momordica charantia]

2.5e-41

94.38

Show/hide

Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

XP_038888057.1 NAD-capped RNA hydrolase DXO1 [Benincasa hispida]

2.5e-41

94.38

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Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHH3 Decapping nuclease

1.2e-41

94.38

Show/hide

Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

A0A1S3CPX4 Decapping nuclease

1.2e-41

94.38

Show/hide

Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

A0A5A7TAX3 Decapping nuclease

1.2e-41

94.38

Show/hide

Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

A0A5D3E5F2 Decapping nuclease

1.2e-41

94.38

Show/hide

Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

A0A6J1DT00 Decapping nuclease

1.2e-41

94.38

Show/hide

Query:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++IG +NDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQA+SCPDAITHHIELL
Subjt:  LLIG-KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

SwissProt top hits

e value

%identity

Alignment

Q8RY73 NAD-capped RNA hydrolase DXO1

2.5e-36

79.76

Show/hide

Query:  KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++D G+LVRTERL T+DI  R ++KNYWQGGVCLAFADEVLCWLYGTVKENEDYILQF HPF RLELLQA SCPDAIT+H+ LL
Subjt:  KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

Arabidopsis top hits

e value

%identity

Alignment

AT4G17620.1 glycine-rich protein

1.8e-37

79.76

Show/hide

Query:  KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++D G+LVRTERL T+DI  R ++KNYWQGGVCLAFADEVLCWLYGTVKENEDYILQF HPF RLELLQA SCPDAIT+H+ LL
Subjt:  KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

AT4G17620.2 glycine-rich protein

1.7e-35

77.38

Show/hide

Query:  KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++D G+LVRTERL T+DI  R ++KNYWQ  VCLAFADEVLCWLYGTVKENEDYILQF HPF RLELLQA SCPDAIT+H+ LL
Subjt:  KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

AT4G17620.3 glycine-rich protein

1.7e-35

77.38

Show/hide

Query:  KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL
        ++D G+LVRTERL T+DI  R ++KNYWQ  VCLAFADEVLCWLYGTVKENEDYILQF HPF RLELLQA SCPDAIT+H+ LL
Subjt:  KNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

Sequences

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CDS sequence

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mRNA sequence

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ATGGATTTCTTAACCTCGGGTCAGCCAAAGCGGCCCCTTCTAATTGGGAAGAATGATGCTGGTCAACTTGTTCGGACAGAAAGATTGAGAACTAAGGACATCACACAGAG
AGTGAAAATGAAGAACTATTGGCAGGGAGGAGTCTGTCTGGCCTTTGCTGATGAAGTGTTATGTTGGCTTTATGGAACAGTCAAAGAAAATGAAGATTACATATTGCAAT
TTGCACATCCTTTCACTCGTTTAGAGCTTCTTCAAGCCGCCTCATGCCCAGATGCTATCACTCATCACATTGAGCTTTTGTAGTCAACTGAAAGATTCCCTCATTCCCTC
CAATTAAAGTTGAAGACGTGTCGGCTCTCACAAAAAAACGCATAATGTATTATCAACAAGCTCATCACCCCACAGGAGAGAAAAAAAAAAGAAGGAAAAAGAGAAAGGTA
AAGAAAAGAAAGAAGGAAGTAGCTTTATTTTGCACAGGTATTATAATTATATTTTGAGTAGTTTGATTAGGTGTTATTATCAGACATGAACTCCAATCCCATTTTGATTC
CATTGTCTTGTCTTTAGAAGATTGGAGCTGAATGGCATATACCTTTTCTACTTGTTCTTTTCATTTTTGATAGTTCACTTTTGTACTTGGTTAATGTGCTGAAACCATCA
GTTTTTATCAATAGAAACATTCACATCCTTACCTTAA

Protein sequence

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MDFLTSGQPKRPLLIGKNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQAASCPDAITHHIELL

CaUC09G170260 (gene) of Watermelon (USVL246-FR2) v1 genome