CuGenDBv2

Gene ID	CaUC09G171000
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	mediator of RNA polymerase II transcription subunit 15a
Genome location	Ciama_Chr09:19564307..19567377
RNA-Seq Expression	CaUC09G171000
Synteny	CaUC09G171000
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571702.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]

7.3e-49

57.14

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------
        MDTNNWRPT GGEP IEA DWRSQ QP+SRQRI NK+                         F EKIYTAATSQ  + +  SLK                
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------

Query:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN
                               LNQGQSIS+PQSSNQPQ  QQLLSQ IQNNIVSQSSSSL SA P ++G A+SS+ NMVGQNPSM+NVS I QNSVGN
Subjt:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN

Query:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ
        AMGQGVPSNVFTN QRP+QGRQVV QQQQQQ  + QQQ
Subjt:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ

XP_022963528.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]

7.3e-49

57.14

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------
        MDTNNWRPT GGEP IEA DWRSQ QP+SRQRI NK+                         F EKIYTAATSQ  + +  SLK                
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------

Query:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN
                               LNQGQSIS+PQSSNQPQ  QQLLSQ IQNNIVSQSSSSL SA P ++G A+SS+ NMVGQNPSM+NVS I QNSVGN
Subjt:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN

Query:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ
        AMGQGVPSNVFTN QRP+QGRQVV QQQQQQ  + QQQ
Subjt:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ

XP_023553730.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo]

7.3e-49

57.14

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------
        MDTNNWRPT GGEP IEA DWRSQ QP+SRQRI NK+                         F EKIYTAATSQ  + +  SLK                
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------

Query:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN
                               LNQGQSIS+PQSSNQPQ  QQLLSQ IQNNIVSQSSSSL SA P ++G A+SS+ NMVGQNPSM+NVS I QNSVGN
Subjt:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN

Query:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ
        AMGQGVPSNVFTN QRP+QGRQVV QQQQQQ  + QQQ
Subjt:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ

XP_038887614.1 mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]

5.6e-49

57.08

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQH-------------------HKACSL
        MD NNWRPT G EP IEA DWRSQ QP+SRQRI NK+                         F EKIYTAATSQ                    H   SL
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQH-------------------HKACSL

Query:  K----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN
                               LN GQS+S+PQSSNQPQ  QQ+LSQ IQNNIVSQSSSSLSSA P +AG A+SS+SNMVGQNPSM+NVS + QNSVGN
Subjt:  K----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN

Query:  AMGQGVPSNVFTNPQRPLQGRQVVP-QQQQQQPHSHQQQQ
        AMGQGVPSNVFTN QRPLQGRQVVP QQQQQQP + QQQQ
Subjt:  AMGQGVPSNVFTNPQRPLQGRQVVP-QQQQQQPHSHQQQQ

XP_038887807.1 mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]

5.6e-49

57.08

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQH-------------------HKACSL
        MD NNWRPT G EP IEA DWRSQ QP+SRQRI NK+                         F EKIYTAATSQ                    H   SL
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQH-------------------HKACSL

Query:  K----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN
                               LN GQS+S+PQSSNQPQ  QQ+LSQ IQNNIVSQSSSSLSSA P +AG A+SS+SNMVGQNPSM+NVS + QNSVGN
Subjt:  K----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN

Query:  AMGQGVPSNVFTNPQRPLQGRQVVP-QQQQQQPHSHQQQQ
        AMGQGVPSNVFTN QRPLQGRQVVP QQQQQQP + QQQQ
Subjt:  AMGQGVPSNVFTNPQRPLQGRQVVP-QQQQQQPHSHQQQQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C0H1 mediator of RNA polymerase II transcription subunit 15a

1.3e-43

53.45

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLKL---------------
        MD NNWRPT GGEP +EA DWRSQ QP+SR RI NK+                         F EKI+TAATSQ  + +  SLK+               
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLKL---------------

Query:  ------------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMGQGV
                           Q  SIS+PQSSNQ Q  QQ++ Q I NNIV QSSSSLSSA P +AG A SS+SNMVGQNP+++NVS + QNS GNAMGQGV
Subjt:  ------------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMGQGV

Query:  PSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ
        PSNVFTN QRPLQGRQVVPQQQQQQP + QQQ
Subjt:  PSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ

A0A5D3C6P8 Mediator of RNA polymerase II transcription subunit 15a

1.3e-43

53.45

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLKL---------------
        MD NNWRPT GGEP +EA DWRSQ QP+SR RI NK+                         F EKI+TAATSQ  + +  SLK+               
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLKL---------------

Query:  ------------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMGQGV
                           Q  SIS+PQSSNQ Q  QQ++ Q I NNIV QSSSSLSSA P +AG A SS+SNMVGQNP+++NVS + QNS GNAMGQGV
Subjt:  ------------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMGQGV

Query:  PSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ
        PSNVFTN QRPLQGRQVVPQQQQQQP + QQQ
Subjt:  PSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ

A0A6J1EI34 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

3.0e-40

50.85

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------
        MD++NWRP  GGE  ++A DWRSQ QP+SR RI NK+                         F EKIYTAATSQ  + +  SLK                
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------

Query:  --------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMG
                            LNQG S+S P SSNQPQ  QQLLSQ IQNNI SQSSSSL S+ P +AG A++ ++N+VGQNPSM+NVS + Q+SVGNAMG
Subjt:  --------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMG

Query:  QGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQQ
        QGV SNVFTN QRP+QGRQVV QQQQQQ  S  QQQ
Subjt:  QGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQQ

A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

3.5e-49

57.14

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------
        MDTNNWRPT GGEP IEA DWRSQ QP+SRQRI NK+                         F EKIYTAATSQ  + +  SLK                
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------

Query:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN
                               LNQGQSIS+PQSSNQPQ  QQLLSQ IQNNIVSQSSSSL SA P ++G A+SS+ NMVGQNPSM+NVS I QNSVGN
Subjt:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN

Query:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ
        AMGQGVPSNVFTN QRP+QGRQVV QQQQQQ  + QQQ
Subjt:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ

A0A6J1HR60 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

1.5e-47

55.88

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Query:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------
        MDTNNWRPT GGEP IE  DWRSQ QP+SRQRI NK+                         F EKIYTAATSQ  + +  SLK                
Subjt:  MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLK----------------

Query:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN
                               LNQGQSIS+PQ SNQPQ  QQLLSQ IQNNIVSQSSSSL SA P ++G A+SS+ NMVGQNPSM+NVS I QNSVGN
Subjt:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGN

Query:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ
        +MGQGVPSNVFTN QRP+QGRQVV QQQQQQ  + QQQ
Subjt:  AMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQ

SwissProt top hits

e value

%identity

Alignment

F4I171 Mediator of RNA polymerase II transcription subunit 15a

1.1e-15

32.91

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Query:  MDTNNWRPT-HGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLKL--------------
        MD NNWRP+   GEP ++  DWR+Q  P+SRQ+I NK+                         F EKI++ A +Q  + +  S+K+              
Subjt:  MDTNNWRPT-HGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLKL--------------

Query:  -----------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVS--QSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMGQG
                         NQGQ +    S+NQ Q  Q LLSQ +QNN  S    S++L S+ P ++    ++ +++V QN +M+NV+ + Q+S G     G
Subjt:  -----------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVS--QSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMGQG

Query:  VPSNVFTNPQRPLQGR-QVVPQQQQQQPHSHQQQ
        + SN+F+ PQR + GR   +  QQQQQP+ +QQQ
Subjt:  VPSNVFTNPQRPLQGR-QVVPQQQQQQPHSHQQQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G15780.1 unknown protein

7.8e-17

32.91

Show/hide

Query:  MDTNNWRPT-HGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLKL--------------
        MD NNWRP+   GEP ++  DWR+Q  P+SRQ+I NK+                         F EKI++ A +Q  + +  S+K+              
Subjt:  MDTNNWRPT-HGGEPKIEARDWRSQSQPNSRQRIFNKM-------------------------FGEKIYTAATSQ--HHKACSLKL--------------

Query:  -----------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVS--QSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMGQG
                         NQGQ +    S+NQ Q  Q LLSQ +QNN  S    S++L S+ P ++    ++ +++V QN +M+NV+ + Q+S G     G
Subjt:  -----------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVS--QSSSSLSSAAPLIAGFATSSVSNMVGQNPSMENVSTISQNSVGNAMGQG

Query:  VPSNVFTNPQRPLQGR-QVVPQQQQQQPHSHQQQ
        + SN+F+ PQR + GR   +  QQQQQP+ +QQQ
Subjt:  VPSNVFTNPQRPLQGR-QVVPQQQQQQPHSHQQQ

Sequences

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CDS sequence

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ATGGATACAAATAATTGGAGACCTACTCATGGCGGAGAACCCAAAATCGAAGCCAGGGATTGGAGATCTCAATCGCAACCCAATTCTCGACAACGAATTTTCAAC
AAAATGTTTGGGGAAAAGATTTATACTGCTGCTACTAGTCAGCATCACAAAGCATGCAGTCTCAAGTTAAACCAAGGACAGTCAATCTCTATCCCTCAGTCATCC
AATCAGCCTCAATTGTGCCAGCAACTACTCTCCCAGATAATCCAAAATAATATTGTTTCTCAGAGTTCATCCAGCTTATCTTCTGCAGCACCTCTTATCGCTGGA
TTTGCTACATCTTCAGTGTCAAACATGGTTGGTCAGAACCCAAGCATGGAAAATGTATCTACAATTTCACAGAATTCTGTTGGAAATGCTATGGGTCAAGGGGTT
CCTTCCAATGTATTTACTAACCCTCAGAGGCCACTGCAAGGAAGACAAGTTGTTCCCCAACAACAACAGCAGCAGCCACACTCCCACCAGCAGCAGCAGTAG

mRNA sequence

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TCTTGATTCACACAGAATACACACGCCGTCCTCTTGCATGGCTTACTAAATCGTTTACGAGCTTTACGTGAGTAACAAGCCTTCACTATCATCTCTCTGAAATCT
CCTTCGTTTTCCCAATTACCAGATAGCTCTCTGAATTGGACTCCTTGTTTCCTGTAATCAATTGGCCTTCATTGACCCCACCCCACTCTTTGTTATTTGGATTTA
CACACATTCTTTTCTCGTAAGTTGTTTGGAAACTTTTGAATGGATACAAATAATTGGAGACCTACTCATGGCGGAGAACCCAAAATCGAAGCCAGGGATTGGAGA
TCTCAATCGCAACCCAATTCTCGACAACGAATTTTCAACAAAATGTTTGGGGAAAAGATTTATACTGCTGCTACTAGTCAGCATCACAAAGCATGCAGTCTCAAG
TTAAACCAAGGACAGTCAATCTCTATCCCTCAGTCATCCAATCAGCCTCAATTGTGCCAGCAACTACTCTCCCAGATAATCCAAAATAATATTGTTTCTCAGAGT
TCATCCAGCTTATCTTCTGCAGCACCTCTTATCGCTGGATTTGCTACATCTTCAGTGTCAAACATGGTTGGTCAGAACCCAAGCATGGAAAATGTATCTACAATT
TCACAGAATTCTGTTGGAAATGCTATGGGTCAAGGGGTTCCTTCCAATGTATTTACTAACCCTCAGAGGCCACTGCAAGGAAGACAAGTTGTTCCCCAACAACAA
CAGCAGCAGCCACACTCCCACCAGCAGCAGCAGTAGCAGTTTCTTTATCAGCAACTACAGTTACAGCAGATGATGAAGCAAAAGTTTCACAATCTGTCATGCAAC
CTTCAAGGTCACATGGGCAACAGAGCGATCTGTCAAACATGTAGTCTTCGCCATCGCAGCAGCAACAGCTCATGGCTCAGCAAAGCAACCTATCAAATTTGCAGC
AGCAGCAGTTAGGACCTCAAAGTAATGTTTCTGGACTACAACAACAAATGCATGGAACTCAGTCAAATAACTCAACCATGCAGTTAAATCAGCACTCCATGAGTA
TGCTACAACAGAACAAGGTTCAAATGCAGCAGCAACCTCCACAAAATACATCAAATTTATTGTCAATGCAAGGTCAGCGAGGACAACTTCAGTCATCCCCACAGC
TGATGTTACAGATTCCATCGCAATCCACACAAGTCCAACAAGAGGTACTTTACAGCAGCAGCAGCAGCAGCCAAATGCCGTGTCACAGCAGCTCCAACAGAGGCT
TCAAGTTGGATGTCAAGCACCAGGCTTCTTGCTTTAATCACAAAATGTAATAGATCAGCAAAAGCAGTTGTATCATTCACAAAGAGCTCCTCCAGAGACATCATT
GAGTATGTTTTCTTGCCTTGTTATTATTTTTGTGCCTTATCATTAACTATTGAATGATTAAACTCTGTTGATCCATCCGCACAATGAAGTGTTTCCTTAATAGGT
ATGGTTGCCATTTTTTGAATTGGAAAGACGATTGCCATGATCGCCACTAGTTCCTACTTGTAGACTGCCTTAAATCGATGGGTCGGTGGCAATGCTTGGCTGAAG
TATGCTAATGAGCATCTGTTCTGCATCAACACCGCACCCATTGCCACACCCAAAACATTAGTTTCAACAATAAATGGTTCTTTGGAATTAGGCAACCCCGAAATA
GGGACTGCTACCATGGTTGCATTTGATCGTTGGAATGCATCCTCAGCCTCTTCATTCCAAACAAAGCCCCCTTCTTTAAGCAGTTGGGTTAACAAAAGGGCTATC
GAACCATAATTCGCCACAAAATTTACGGTAATACCCCGTCAATCCGAGAAATCCCCCCAATTCTTTCACATTCTGAGGACTTGGCCATCTACTCATGGCTTCAAT
CTTAGATGGGTTGGCAGATACCCCTT

Protein sequence

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MDTNNWRPTHGGEPKIEARDWRSQSQPNSRQRIFNKMFGEKIYTAATSQHHKACSLKLNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLIAG
FATSSVSNMVGQNPSMENVSTISQNSVGNAMGQGVPSNVFTNPQRPLQGRQVVPQQQQQQPHSHQQQQ

CaUC09G171000 (gene) of Watermelon (USVL246-FR2) v1 genome